Eucalyptus grandis (rose gum): 9829634
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Entry
9829634 CDS
T03547
Symbol
rpoB, EucgrC_p012
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
9829634 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
9829634 (rpoB)
03400 DNA repair and recombination proteins [BR:
egr03400
]
9829634 (rpoB)
Enzymes [BR:
egr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
9829634 (rpoB)
Transcription machinery [BR:
egr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
9829634 (rpoB)
DNA repair and recombination proteins [BR:
egr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
9829634 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
9829634
NCBI-ProteinID:
YP_003933954
UniProt:
E3UGV5
LinkDB
All DBs
Position
Pltd:complement(25030..28248)
Genome browser
AA seq
1072 aa
AA seq
DB search
MLGDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQNLFIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVKGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGQGGSLESPFYEISERSKSKKVRMLYLSPSRDEYYM
IAAGNSLALNQRIQEEQVVPARYRQEFLTIAWEQVNLRSIFPFQYFSIGASLIPFIEHND
ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGVTTIAEHEGKIIYTNTDKIILL
GNGDTLSIPLVMYQRSNKNTCMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVA
YLPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLR
NLDKNGIVMLGSWVEAGDVLVGKLTPQTAKESSYAPEDRLLRAILGIQVSTSKETCLKLP
IGGRGRVIDVRWIQKKGGSNYNPETICVYILQKREIKVGDKVAGRHGNKGIISKILPRQD
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRK
LVFSELYEASQQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI
HGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE
VLGTTIIGGTIPKPKDAPESFRLLVRELRSLSLELNHFLVSEKNFQINRKEA
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgctcggggatggaaatgagggaatgtctacaatacctgggtttaatcagatacaattt
gaaggattttgtagattcattgatcagggcttaacagaagaactttataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattggta
gaacctttgataaaagaaagagatgctgtatatgaatcactcacatattcttctgaatta
tatgtatccgcgggattaatttggaaaaccagtagggatatgcaagaacaaaatcttttt
attggaaacattcctttaatgaattccctgggaacttctatagtaaatggaatatacaga
attgtgatcaatcaaatattgcaaagtcccggtatctattaccggtcagaattggaccat
aacggaatttcggtctataccgggaccataatatcagattggggaggaagattagaatta
gagattgatcgaaaagcaaggatatgggctcgtgtgagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggttcgaatctaagagaaattctagagaatgtttgctat
cctgagattttcttgtctttcctgaatgataaagagaaaaaaaaaattgggtcaaaagaa
aatgccattttggagttttatcaacaatttgcttgtgtaggcggagatccggtattttct
gaatccttatgtaaggaattacaaaaaaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatatgaatcggagactaaatcttgatatacctcagaacaatacattt
ttgttaccgcgagatatattggcagctgcggatcatttgattggaatgaaattcggaatg
ggtacacttgacgatatgaatcatttgaaaaataagcgtattcgttctgtagcggatctc
ttacaagatcaattcggattggctctggttcgtttagaaaatgtggttaaaggaactata
tgtggagcaattaggcataaattgataccgactcctcagaatttggtaacttcaactcca
ttaacaaccacttatgaatcttttttcggattacacccattatctcaagttttggatcga
acgaatccattgacacaaattgttcatgggagaaaattgagttatttgggccctggagga
ttaacagggcgaactgctagttttcgaatacgagatatccaccctagtcactatggacgc
atttgcccaatcgacacgtctgaaggaatcaatgttggacttattggatctttagcaatt
catgcgagaattggtcagggggggtctctagaaagcccattttatgaaatctccgagaga
tcaaaatcaaaaaaagtacggatgctttatttatcaccaagtagagatgaatactatatg
atagcggcgggaaattctttagcgctgaatcagcgtattcaagaagaacaggttgttcca
gctcgataccgtcaagaattcctaactattgcatgggaacaggttaatcttcgaagtatt
tttcctttccaatatttttctattggagcttctctcattccttttatcgagcataatgat
gcgaatcgagctttaatgagttcgaatatgcaacgccaagcagttccactttctcggtcc
gagaagtgcattgttggaactgggttggaacgccaagcggctctagattcaggggttacc
actatagccgaacacgagggaaagatcatttataccaatactgacaagatcattttattg
ggcaatggagatactttaagcattccattagttatgtatcaacgttccaacaaaaatact
tgtatgcatcaaaaaccccaggttccgcggggtaaatgcattaaaaaaggacaaatttta
gcggatggtgccgctacagttggtggcgaactcgctttgggtaaaaatgtattagtagct
tatctgccatgggaaggttacaattttgaagatgcagtactcattagcgagcgtctggta
tatgaagatatttatacttcttttcacatacggaaatatgaaattcagactcatgtgaca
agccaaggacccgaaaggatcactaacgaaataccgcatctagaagcccatttactccgc
aatttagacaaaaatggaattgtgatgttgggatcttgggtagaggcgggcgatgtttta
gtaggtaaattaactccccagacggcgaaagaatcatcgtatgccccagaagatagatta
ttacgagccatacttggcattcaggtatccacttcaaaggaaacttgtctaaaactacct
ataggtggtaggggtagagttattgatgtgagatggatccagaaaaaagggggttcgaat
tataatccagaaactatttgtgtctatattttacagaaacgtgaaatcaaagtgggtgat
aaagtagctggaaggcatggaaataaaggtatcatttccaaaattttacctagacaagat
atgccttatttgcaagatggaagacctgttgatatggtcttcaatccattaggagtaccc
tcacgaatgaatgtaggacagatatttgaatgctcactcgggttagcgggggatctgcta
gatagacattatcgaatagcaccctttgatgagagatatgagcaagaggcttcgagaaaa
ctagtgttttctgaattatatgaagccagtcagcaaacagcgaatccatgggtatttgaa
cccgagtatccgggaaaaagcagaatatttgatggaagaacgggagatccttttgaacaa
cctgttataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaata
cacggacgttccagtggacattatgcacttgttacacaacaaccccttagaggaagggcc
aagcaagggggacaacgggtaggagaaatggaggtttgggctctcgaggggtttggtgtt
gctcatattttacaagagatgcttacttataaatcggatcatattcgagctcgtcaagaa
gtacttggtactacaatcattgggggaacaatacctaaacctaaagatgctccagaatct
tttcgattgctcgttcgagaactacgatctttgtctctggaactgaatcatttccttgta
tctgagaagaacttccagattaataggaaggaagcttaa
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