Erythranthe guttata (spotted monkey flower): 105948854
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Entry
105948854 CDS
T07346
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
egt
Erythranthe guttata (spotted monkey flower)
Pathway
egt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105948854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egt03021
]
105948854
03019 Messenger RNA biogenesis [BR:
egt03019
]
105948854
Transcription machinery [BR:
egt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105948854
Messenger RNA biogenesis [BR:
egt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105948854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
105948854
NCBI-ProteinID:
XP_012827554
UniProt:
A0A022PY32
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MDDGEGGLNFDFEGGLDAGPIHPTASVPVIQSSADANIASAAAANGNNHSAGPVPATQAA
EGMGGGGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRQYGECREQDCVY
KHTNDDIKECHMYKLGFCPNGTDCRYRHAKLPGPPPPVEEVLQRIQQLTSYNHGNSNRFQ
NRNSNFSQQAEKSQFSQGTNGTNQIGKSRITEAANVLQQPQLQQQGSQGQTLNPSNSQQN
QASRTATPLPQGTSRYFVVKSCNNENLELSVQQGVWATQRSNEAKLNEAFESVDNIILIF
SVNKTRHFQGCAKMTSRIGGSISGGNWKNAHGTAHYGQNFSVKWLKLGELSFNKTRHLRN
PFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAVALAAEAKREEEKAKGVNLEN
ENENPDIAPFEDNEEEEEEEEESEEEDENPGHVFGAQARGRGRGMGMMWPPQMPLARGPH
TFPGPRGFPPNLMGADGFSYGHMTPDGFPMHDPFAMIPRGYGPAYGPRFPGDFVGPAPGM
MFPGRPSGRFGMMMGPGRAPFVGPGRAPFYPPPPPQPGQQNQNRAKRDQKGPTNSYRNDG
SDEQQGKVKEAAGDVGQNRGNIIIHGNNDESESEDEAPRRSRHGEGKKKRRSLEADSSDE
PV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggagaaggtggtttaaactttgatttcgagggcgggctggatgcgggcccg
attcatccgactgcatcggtacccgtaatccaatcctcggcggatgcgaacatcgcatca
gccgcggcggcgaatggcaacaaccattctgcaggccccgtgccggcgactcaggcggcg
gaggggatgggtggtgggggaaggcggagtttccggcagactgtgtgccgacactggctg
cgatcactgtgcatgaaaggggaggcctgtgggttccttcatcagtacgacaagtcgcgg
atgccggtttgccgattcttccgccaatatggtgaatgccgcgagcaggattgcgtgtac
aaacacacgaatgatgatataaaggagtgccatatgtataaactgggattttgtccaaat
ggcaccgactgtagatacaggcatgcaaagctgcctggacctccgcctcccgtggaagaa
gttcttcagaggattcagcagttgacttcatacaaccatggaaactctaacagatttcaa
aaccgtaattcaaatttttcccagcaggcagaaaagtcgcagttctcacaaggaactaat
ggcacaaatcaaataggaaaaagtagaataacagaggctgctaatgtgctccaacaacca
caacttcagcagcagggcagccaaggtcaaacactgaatccttccaatagccagcaaaat
caagctagtaggactgctacacccttgccccaaggaacatctaggtactttgtggtcaaa
agttgcaacaacgagaatctggagctgtctgtacaacaaggagtatgggcaactcagaga
agcaatgaggcaaaacttaatgaagcttttgaatctgttgataatatcattttaatcttt
tcagttaacaagactcgacatttccagggatgtgcaaagatgacatccagaattggcggt
tctattagtggaggaaactggaagaatgctcatggaactgctcattatggacaaaatttc
tctgtcaaatggttgaagcttggtgaattatccttcaacaaaacacggcatttgagaaac
ccattcaatgagaacttaccagtaaagataagtagggactgtcaggaactcgagccttct
attggtgagcagttggcgtccttgctgtaccttgaaccagacagtgatcttatggccgtc
gcactggcagcagaagcaaagcgagaagaggagaaggcaaagggagtaaacctcgagaat
gagaatgaaaatccagatattgcaccgtttgaagataatgaagaggaagaggaagaagaa
gaagaaagtgaagaagaggatgaaaacccaggacacgtttttggagctcaagcaagggga
aggggcagaggaatgggaatgatgtggcctcctcaaatgcctcttgcacgtggaccccac
actttccccggcccccgaggcttcccccccaacttgatgggggccgatggattttcttac
ggacatatgactcctgacggtttccccatgcacgatccttttgcaatgattccccgcggc
tacggaccagcgtacggtcctagatttcccggtgattttgtgggtcctgcccctgggatg
atgttccctggtcgtccttctggtcgatttgggatgatgatgggcccagggcgggcccct
tttgtgggtcccggtagggctcctttttatccaccaccaccgccgcagccaggtcagcaa
aatcagaatagagcgaagagagatcagaaaggaccaactaatagctataggaatgatggc
tcggatgaacaacaaggtaaggttaaagaggcagcaggcgatgtagggcagaatcgtgga
aatattattattcatggaaataacgatgaaagtgaaagtgaggatgaagctccaagaagg
tctagacatggggaaggaaagaagaagaggcgtagccttgaggctgattcttctgatgaa
cctgtgtaa
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