Erythranthe guttata (spotted monkey flower): 105954454
Help
Entry
105954454 CDS
T07346
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
egt
Erythranthe guttata (spotted monkey flower)
Pathway
egt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105954454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egt03019
]
105954454
Enzymes [BR:
egt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105954454
Messenger RNA biogenesis [BR:
egt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105954454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105954454
NCBI-ProteinID:
XP_012833577
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MFFKRFLCSHTAAARRRHHHGKQWSVKQVTNSNFSEALPEIKACIFNSDFVAVSLQKTGG
HSATWQRILPIDTAETAYMKVKDAATRFQILQFSVCPFSVKGSKVIAHPFNFHVFPRDEL
KVGMPSYSFSCQSSYLTSMAREGFDFNACIYNGISYLSKAQESAAKIQTGNLSPVNGAVE
PSSVYSVADTIFMERIESRVKNWIRACKDSNKTEVADALISSLRKLVAGSEVFGSRPSLT
IDVCSERQVPLVIEALKEFVDVVPLHVTAKGVGVQAVRAVLTSSKEDKTLLEKEIQDTEH
EQRKLVRGFREVIDLISTSQRPVVVHNSLYDLALIHSKFQAPLPSTMDEFKNSLLSLFPH
TLDVNHLMKEIGPFDKMNNVQAALSYLERRFSAPIDMDISNQAEEPENTNTHGHNVLRVC
QLFVKLCSILKIPLEFPEGERITQLAPSLQRTSNTFSSKVHTADDDGVGIRSGNSEKVST
DNLVFLWGLKNRKSSRNLKNLICDSYNVLSEEFDVRMLDRTCAVVVFWNAGVLDRFLGMV
EGSGGEGLRCARYNTYRRVCESGLWKADLAECFDETLDESETLSRTEAKLEESVIYWNDD
EMINLDDL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcaaacgctttctctgctctcacaccgccgccgctcgccgccgccaccaccac
ggcaaacaatggtcggtgaagcaggtgacgaattccaacttctcggaggctttgccggaa
atcaaagcctgcatattcaattccgacttcgtagcggtctcgttgcagaaaaccggcggc
cactccgccacgtggcaaaggatcctccccatcgatacggcggagacggcttacatgaag
gtcaaggacgccgccacgcggtttcagattctccaattctcggtctgccccttttcagtt
aagggttctaaggtcattgcacacccgtttaacttccacgtgtttccaagggatgagttg
aaagtggggatgccgtcttacagtttttcatgtcaatcgtcgtatctaacctctatggca
cgagaaggttttgatttcaatgcttgcatctacaacggtatatcatacttgtcgaaagca
caagagtcggctgcgaaaattcaaactggaaatttatcgcccgttaacggcgcagtggaa
ccttcatcagtctactcagttgctgatactatattcatggaaaggatcgaatcccgagtt
aagaattggatacgtgcttgtaaagattcaaacaaaactgaggttgcagatgctctcata
agttctttaaggaaacttgtagctggaagtgaagtttttggttctcgaccatccttgact
atagatgtctgcagtgaacgccaagtgccgcttgtaatagaggcattgaaagagtttgtt
gacgttgtaccattacatgttacagcaaagggagtgggtgtgcaggccgttagagctgtt
ttgacgagttcaaaagaagacaaaacccttctcgagaaagaaattcaagatacggaacac
gagcaaagaaagcttgtccgtggcttccgtgaggtgatagacttgatttctacttctcag
agacctgtcgttgtgcacaattcactctatgatcttgctttaatacattcaaagttccaa
gctccactaccgtcgactatggatgaattcaagaattcgttgctttcgctctttcctcac
acacttgacgtcaaccatcttatgaaggaaatcggcccattcgacaaaatgaacaacgtg
caagcagcattgtcctatttggagagaagattttctgcaccaatagacatggacatctct
aatcaagcagaagagccagagaatacgaatactcatggtcataatgttctcagagtatgc
cagttgtttgttaaattgtgctccatactaaaaatacctctcgagtttccggaaggtgag
cgtattacccaattggctccttcccttcaacgcacttccaatacatttagttccaaagta
catactgccgatgacgacggtgtgggaattcggagtggcaatagtgaaaaggttagtacc
gacaatttggtgttcttgtgggggttaaaaaacagaaaatcgtcccgaaatctgaaaaac
ctcatttgtgattcgtacaatgtcttgtctgaagaattcgatgttagaatgttggatagg
acatgtgctgtagttgttttctggaacgctggtgtgttggaccgttttctcgggatggta
gaaggttccggaggagaaggtttgagatgtgcgagatataatacgtacagaagagtttgc
gaatcgggtttatggaaagcagatttggcggagtgctttgatgaaacgttggatgaaagc
gaaaccctctcaagaaccgaggcgaagctggaggagtcagtaatatactggaacgatgat
gaaatgattaacctggatgatctttaa
DBGET
integrated database retrieval system
