Erythranthe guttata (spotted monkey flower): 105957921
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Entry
105957921 CDS
T07346
Name
(RefSeq) ATP-dependent RNA helicase SKI2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
egt
Erythranthe guttata (spotted monkey flower)
Pathway
egt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105957921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egt03019
]
105957921
Enzymes [BR:
egt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105957921
Messenger RNA biogenesis [BR:
egt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105957921
mRNA degradation factors
3'-5' decay
Ski complex
105957921
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
105957921
NCBI-ProteinID:
XP_012837396
LinkDB
All DBs
Position
Unknown
AA seq
1352 aa
AA seq
DB search
MDRVPAPNELPFRVGFTGHSGRLRVEPLPPVERRRNPLDSLPDFVLPPAFPKETPETIKE
YIKDKYLVPRLDEDVFSPQNAGRQWEFDWFDRAKIQLEPSMPRSVVAPSWEMPSRRKECE
SELKRWEPESLEVDVSEMATGPEDSGALPRITGPAKDFVRGSINSRPFRPGGLGNADSSS
KILPDGACNGEWARQLLRGGPPLTLPPGFKKGMDLGDLKAHSFRWNVYEQEHVDKSTPDA
KVIELSMQFDDLFKKAWEDDVMKFVGDGHMPESESPIAPVNESLEIDTEEELHAVDDVIM
KESSVLDEILSVESVESTQPRLDVNTESIAQLKEGWALRGGNEEIAERFHELVPDMALDF
PFELDPFQKEAIFYLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISN
QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYV
NDAERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKQIRVTGTTKRPVPLE
HCLFYSGDLYKICENEKIIPHGLKAAKDMYRKKNSATATGTGSYSGSSAGNERARTMRRE
NSSQAKQNKHSGSQNMQNFSGANPGTQTNGGNSYGSRRSEASLWLSLINKLSKISLLPVV
IFCFSKNRCDRSADNLTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQGLLRR
GIGVHHAGLLPIVKEVVEMLFCRGVVKILFSTETFAMGVNAPARTVVFDTLRKFDGKEFR
QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPEEKDLKHVIVGSATRLESQFRLTYIM
ILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKIIECIKGEPAIEEYY
EMYSEAERYSNMITEAVMLSPVSQQHLQPGRVVVVKSQLDQDHLLGVVVKAPSANSKQYI
VLLLTPKLPSILKAPSGSEEKKGTDLQVLVPKSKRGLEDDYYSSVSSRKGTGVVNVKLPH
FGSAAGVNYEVRGVQNNDFLSICVAKIKINQVGLLEDVSAGAYSNTVQQLLALSSNGNKY
PPALDPVKDLKLKDMKVVEDYYKWTNLLHKMAQNKCHGCVKLEEHIKLAQELKGHREEVN
ALKFQMSDEALQQMPDFQGRIDVLKEIGCIDSDLVVQIKGRVACEMNSGEELICTECLFE
NQLNDLEPEEAVAIMSAFVFQQKKTSEPSLTPKLSQAKKRLYDTAIRLGELQAKFNVQVD
PQEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFRNAAAI
MGNSALHKKMEMASNAIKRDIVFAASLYITGI
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggtacctgcgccgaacgagctccctttccgggtcgggtttaccggacatagc
ggccgccttagggttgaacctctgccgcccgtcgaacgccgccgcaaccctctcgactct
cttcccgatttcgttctcccgccggcgttccctaaggaaacaccagaaaccataaaggag
tatatcaaggataaatatttagttccgaggttggacgaagatgttttttctccgcaaaat
gctggcagacagtgggaattcgactggtttgacagagctaaaattcagctggagccatca
atgccacggtctgtggttgctccatcttgggaaatgccttcgaggcggaaagagtgcgaa
tcagagctgaaaaggtgggagcctgaatcgttagaggtggatgtatcagaaatggcaact
ggacctgaggattctggtgctttgccacggattactggacctgcaaaggattttgtgaga
ggaagtatcaacagccgcccttttcgcccaggtggactgggaaatgctgattcatcctca
aagattcttcctgacggtgcttgcaatggtgaatgggcccgtcagcttctgcgtggtggt
cctccactgacccttcccccaggctttaagaaaggaatggatctaggtgatctcaaggcg
cattctttcagatggaatgtttatgagcaagaacacgtggacaagagcacgccggatgcg
aaggtgatcgagctatcaatgcaattcgatgacttgttcaagaaagcttgggaagacgat
gtcatgaaatttgtgggagatggtcatatgccagaatcagaatctccgatcgcgcctgtc
aatgaatctctggaaatagacactgaagaagagttacatgcagttgatgatgttatcatg
aaggagtcatctgttctggatgaaattttgtctgtggaatcagtggaatcaacacaacca
agattggatgtaaatacagaaagtattgcacaactgaaagagggatgggctcttcgtggt
ggcaatgaagaaattgcagaaaggtttcacgaacttgttcctgatatggctcttgatttt
ccttttgaacttgatcctttccaaaaagaggccatattttatctggaaaagggtgattct
gtttttgtggcagctcatacgtcagccggaaagacggttgtcgcagaatatgcatttgcc
ctggcgacaaaacactgtacaagagctgtatatactgctcctattaagaccatcagcaat
cagaagtatagggacttttgtggaaaatttgatgttggcctcctcactggtgatgttagc
ttgaggcctgaggcctcttgtctaataatgaccactgagatattaagatcaatgctctac
aagggggctgatatcatacgtgacatagaatgggttatatttgatgaagtgcattatgtt
aatgatgctgaaagaggtgtggtttgggaagaagttatcatcatgcttcccaggcatatc
aactttgtgctactttcagccacggtaccaaacacaattgagtttgctgattggattggt
aggacaaagcagaagcaaattcgtgttactgggacaacaaaaagaccagtccctctagag
cattgccttttctattctggagacctttataaaatttgtgaaaatgaaaagattatcccc
cacgggttaaaagctgccaaagatatgtacagaaagaagaactcagctacagcaactggg
acaggatcttactctgggtcttcagcaggcaatgaaagggccaggactatgaggcgcgaa
aattcttctcaagcaaaacagaataagcattctggatcccagaatatgcagaacttctct
ggggctaatccggggactcaaaccaatggtggtaacagttatggctcgaggagatcagaa
gcttctctatggttatcgcttatcaataagctttcaaagatatccctcctaccagtggtt
atattctgcttttcaaagaaccgctgtgatagatcagctgacaacttgactggaactgac
ctcactagtagctcagagaaaagtgaaattcgggtattttgtgataaagcattttcaagg
ctaaaaggatcagacagaaatctgccgcaggttgttagagttcaaggacttcttcggaga
ggaattggtgtacaccatgcaggactacttccaattgtcaaggaagttgttgaaatgctt
ttctgtcgtggggttgtgaagattctcttttcaacagagacatttgccatgggagtcaat
gctccagccaggacggttgtgtttgatactttaaggaaatttgatggcaaggaatttcga
caattacttcctggagaatatactcaaatggccggtcgtgccggcaggagaggacttgat
aaaattggtacggttgttgtgctatgccgtgatgaaattcctgaagagaaggatctgaag
catgttatagttggtagtgcaactaggcttgaatctcagtttcgactcacctatatcatg
atcttgcatctgcttcgcgtcgaagaattaaaggtggaagacatgctgaaaagaagtttt
gctgaatttcatgctcagaagaaacttccagagcagcaacaacttctaatgcgaaagctt
gctcaacctaccaaaattattgaatgcataaagggtgaaccggcgatagaggaatattat
gagatgtactcggaggctgaacggtatagcaacatgattacagaggcagtcatgctgtct
ccagtttcccaacaacatcttcaaccgggaagggtggtagtggtgaaatcacaattggat
caagaccatttactgggtgtggtcgtgaaagcaccttcagctaattctaagcaatacata
gtcttattgctgactcctaaattgccttcaatcttaaaagctccatcaggtagcgaagag
aaaaaaggtactgatctccaagtattagtaccaaagtcaaaacgtggtttggaagacgat
tattattcttcagtctcatctcgtaagggaactggagttgttaacgtaaaactacctcac
tttggttctgctgctggagtgaactatgaggttagaggggttcagaataatgatttctta
tccatatgcgttgcaaaaataaagatcaaccaagttggacttcttgaagatgttagtgct
ggtgcgtattcaaatacagtgcagcagcttttggctctgagctcaaatggaaacaagtat
cctccagctttggatccggtgaaagatttgaagctgaaagacatgaaagttgtcgaagat
tactataaatggactaacttgttgcataagatggcacaaaataagtgtcatggttgcgtc
aaactggaagagcacattaaattagcacaggagttaaagggacaccgagaggaagtgaat
gctcttaaatttcaaatgtcggatgaagcacttcagcagatgcctgactttcagggtcgg
attgatgttttgaaggaaattggatgtatagatagtgatctcgtagtacaaattaaaggt
cgtgttgcatgtgaaatgaattctggggaggagttgatatgcacagagtgcttatttgag
aatcaactgaatgacctggaaccagaagaagctgtcgcaattatgtcagcctttgtcttt
cagcagaaaaagacttctgaaccttctcttacaccaaagctttctcaagctaagaagaga
ttatatgatacggctataagacttggagagcttcaggcaaaatttaacgtgcaggttgat
cctcaggaatatgcacaggagaatcttaagtttggtctagttgaagttgtatatgaatgg
gcaaagggcaccccgtttgcagatatttgtgaacttactgatgttcctgaaggcatgatc
gttaggacaatagtgaggttagatgaaacatgccgtgaatttagaaatgcagctgcaatt
atgggcaactctgcacttcacaagaaaatggaaatggcttcgaatgcaataaagagggat
atagtctttgccgcgagcttgtacattacaggaatttag
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integrated database retrieval system
