Erythranthe guttata (spotted monkey flower): 105959305
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Entry
105959305 CDS
T07346
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
egt
Erythranthe guttata (spotted monkey flower)
Pathway
egt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105959305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egt03021
]
105959305
03019 Messenger RNA biogenesis [BR:
egt03019
]
105959305
Transcription machinery [BR:
egt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105959305
Messenger RNA biogenesis [BR:
egt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105959305
U7-dependent histone pre-mRNA processing factors
105959305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
105959305
NCBI-ProteinID:
XP_012838826
LinkDB
All DBs
Position
Unknown
AA seq
1325 aa
AA seq
DB search
MAGPPAREQALSLLAAANNHGDLAVKLSSLKQAKDILLSVEPSQAAEIFPYLVELQYSPE
TLVRKYLLEIIDEIGAKTTEHLSILLPALLTFLKDNNPTVAKQSIVTGTNFFCVVLEELA
FQFQRRGIVERWLEELWTWILKFRDAVLCFLFEVRPVGPKLLAIKFLEIYVLHFTLDSNG
SGTQNPEVTIRQGKAFNVSWITDGHPVLDASALISDANRYMCILLDILQSASSFPGSLTI
AAINSLAAIARKRPVYYKSVVTALLDFNPSLEPAKGAHTVSIQYCLRTAFLGFLRCTHPV
IAESRERLLKELRSMNAGDAADQVVRHVDKIMKNYERASKDLKFAKDDHLSTQLHISGDA
TKKRSAPSNNDEQHNSFDASSKRLRYGPNSDTTTSINNDAGQNHVNGIFPKLPVLDVDLT
PVEQMIAMIGALIAEGERGVQSLEILVSNIHADLLADIVITNMKHLPENPPPVAKYSNRP
GDSSTDPAQVVSSNGSATSMQTSDLSAKVHASSSNTTSLPFSDMSISSNLSTDSKRDPRR
DPRRLDPRRMVIPIEAPPTSVFEDNANAVQLAVQTDFDASSSFIPPVLLPPSSIPESTSP
LLMPTNETDLNLSELEVDLSIPEDEVQDVNANAFSPDRVTNNALLLSPSPINKAEEPVVH
ESMDVAMLDEAYSPSSQETDPFSPDTEAAEISLAELPVLPVYVNLAEDHQRNARRLALER
LINLYQNSERTDLKQTQIALVARLFAQIDDNDVIEMVQKRIVSDYEQKKGHELVLHILYH
LHSLVISDSASSAAAVYEKFLLGVAKSLLVDLPASNKSFSRLLGEVPCIPDSVLAMLDDI
CTKSHSGADGDRVTQGLGAVWSLILGRPQSRQACLAIALKCTVLPEDDVQAKAIRLVSNK
LYAVSYISENIEQFATDMFLSAVDQRFSDSLLSQSAHSEKRIGVQVESMETSISGSHVSE
PGISETSTSVIQDASMDDSSSVFSQSHRLMSLFFALCAKKPTLLELVFNSYGRASKAVKQ
AVHRHVSVLVRSLGSSYSQLLHIISNPPHGSEDLLIQVLHLLSEGQTPPPDLVVTVKHLY
ETKLKDATILIPILSAFSRDEVLPIFPRLVQLPLPKFQTALAHILQGSAHTGPALTPVEV
LVAIHDISPDKDGLPLKKITDACSACFEQRTVFTQQVLAKALNQMVDRTQLPLLYMRTVI
QAIDAFPTLVDFVMEILMKLVNRQVWRMPKLWVGFLKCISQTQPHSFHVLLQLPSSPLES
ALNKYPNLRGPLTAFVNQSNSKTSLPRSTLVLLGLASETHIQQPQVTSSLHASDPNSSIS
GTTFT
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcccccggcgagggagcaggcgctctcactcctagcagcggcgaataaccat
ggagatttggccgtgaagttatcgtcgttgaagcaggccaaagatatattgttgtccgtt
gaaccgtctcaagcggcggagattttcccttatttggttgagctccagtattcccccgaa
accctcgttagaaagtatctcctcgagataatcgacgagattggagccaaaacaacggaa
catctatccatattgttgcctgccttattgacatttttgaaagataataatcccactgtt
gcaaagcaatctatagtgactgggacaaattttttttgtgttgtcttggaagagttagct
tttcagtttcaacggcgtggtatagttgagagatggcttgaagagctgtggacgtggata
ctcaaatttagagatgctgtattgtgctttctgttcgaggtgcgtcctgttggtccaaag
ttgttagcaataaagtttctagaaatatatgttttacacttcacgttggactccaatggt
tctggaacgcagaacccagaagtgacgataaggcaagggaaggcgtttaatgtctcctgg
ataacggacggtcatcctgttctggatgcatctgctctcatatcagatgcaaatagatat
atgtgcattttgttggatatcttgcagtcagctagtagttttcctggttccttgacgatt
gctgctatcaatagtcttgcagctattgcacggaagaggcctgtctactataaatcggtc
gttactgcactgcttgattttaatccaagtcttgagccagcaaagggtgcccatactgtc
agcatccagtattgtttgagaactgcatttttagggtttttaaggtgtacccatcctgtc
attgcagagtcaagagagagattgcttaaagagttgcgatcaatgaatgctggagatgct
gccgatcaagttgtccgacacgtagataaaatcatgaaaaactacgagcgtgcttcaaaa
gatctgaaatttgctaaggatgatcatctatccactcagttacatatttcaggggatgcg
acgaagaaaaggtcagcaccatctaacaatgacgaacagcataatagctttgatgccagc
tctaagagactccgttatggccctaacagcgatacaaccaccagtattaataatgatgct
gggcagaatcatgtcaatgggatattccctaagctccctgtactggatgtggatctgacc
ccggtggaacagatgattgctatgattggtgctttaattgcagaaggagaaagaggagtt
caatctcttgaaattcttgtttccaacatacatgctgatttgctcgccgatattgtcata
acgaatatgaagcacttaccagagaatccacctcctgtggcaaaatacagtaatcgtccc
ggtgattcttctactgacccagcccaggtagtctcctcaaatggttctgcaacctctatg
cagacatcggacctttcagctaaagtacatgcatcttcatccaacacgactagtttaccg
ttttctgatatgtcgatttcctcgaatctttctacagactccaaacgtgatccaagaagg
gatcctcgtcgccttgatccgaggcgcatggtgattcctattgaagcgccaccaacatct
gttttcgaagataatgcaaatgctgtgcaattggctgttcaaactgatttcgatgcttct
agttccttcattccacccgtattgctacctccatcatcgattcctgaaagtacctctcca
ctcctcatgcccacaaatgaaactgacttaaatctatcagaattggaagttgacttgtca
attccagaagatgaagtccaggatgtgaatgcaaatgcattctctccagatagggtgaca
aataatgctttacttctttcaccatcccctattaacaaagctgaggaacctgttgtccat
gaatcgatggatgttgccatgctagatgaagcttattccccatcatcacaagaaacagac
ccattttctccagatactgaagcagctgagatttcattggcggagttgccagttcttccc
gtttacgttaatctagctgaagaccatcaaagaaatgcaaggagattagcacttgaaagg
ttaatcaatttgtaccagaattcagagagaacagatcttaagcaaacacagattgcatta
gttgctcgattgtttgcacagattgatgacaatgatgtgattgaaatggtgcagaaacgt
attgtatcagattatgaacagaaaaagggacacgagctcgtattgcacattctctaccat
ctgcatagtcttgtgatctcagattctgcgtcatctgccgctgctgtatatgagaaattc
cttctgggagtggcaaagtctctgctagttgatttaccagcatccaacaagtctttcagt
cgacttcttggggaggttccttgtatacctgattctgtattggcaatgttggatgacata
tgtaccaagagtcactccggggcagatggtgatcgtgtcactcagggccttggtgccgtg
tggagcttgatcctgggccggccacagagtcgtcaagcatgtttggctatagctttgaag
tgcactgttctcccggaggatgatgttcaagcaaaggctatacgcctggtttcaaacaaa
ttgtacgcagttagctatatttctgagaacattgagcaatttgcaacagatatgttcttg
tcagctgtagatcagagattttcagattcattgctttcacaatctgcacattcagaaaaa
agaatcggagtgcaggtagaaagcatggaaacatcgataagtggatctcatgtttcagag
cctgggatttctgaaacatccacaagtgtcatacaggatgcatccatggatgattcgtca
agtgtgttttctcaatctcacagactcatgtccttgtttttcgcattatgcgcaaagaaa
ccaactcttctagaacttgtttttaacagttatgggcgggcctcaaaggctgttaagcag
gctgtacatcgtcatgtatctgttcttgtgaggtctctggggtcgtcatattctcaattg
cttcatataatatctaatccaccccacggaagtgaagatttattgatacaggttcttcat
ttactgtctgaagggcaaacaccacctccagatttagtagtgactgtcaagcatttatat
gagaccaaactgaaggatgctactattcttataccaattctttcggccttttctagagat
gaggtcttacctattttccctcggcttgtccagcttcctttacccaagtttcagactgca
cttgctcatattttgcagggttctgctcatacaggtcctgcattaacacctgttgaagtt
ttggtagcaatccatgatatttctcctgataaagatggtcttccgctgaaaaagatcacg
gatgcttgctcagcttgttttgagcagcgcacggtttttacgcaacaagtcctggcaaag
gctttaaaccagatggtcgatcgcactcaacttccactgctctacatgagaactgtaatc
caagcaattgatgcttttccaacactggtggattttgtcatggaaatcctgatgaaactt
gtaaacagacaggtatggagaatgccaaaactatgggttggcttcttgaaatgtatttcc
caaacgcagccgcattctttccatgtattgctacagttgccatcatctccacttgagagt
gctctgaacaaatatccaaatcttcgtggtccacttactgctttcgtgaaccaatccaat
agtaaaacctctctacctaggtcaacactagtgcttcttggcctggcatctgaaacacac
attcagcaaccacaggttacttcatctttgcatgcctcagatccaaattcatcaattagc
gggacaacattcacttaa
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