Erythranthe guttata (spotted monkey flower): 105962564
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Entry
105962564 CDS
T07346
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egt
Erythranthe guttata (spotted monkey flower)
Pathway
egt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105962564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egt03019
]
105962564
03041 Spliceosome [BR:
egt03041
]
105962564
03009 Ribosome biogenesis [BR:
egt03009
]
105962564
03016 Transfer RNA biogenesis [BR:
egt03016
]
105962564
Enzymes [BR:
egt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105962564
Messenger RNA biogenesis [BR:
egt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105962564
Spliceosome [BR:
egt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105962564
Complex C
U4/U6.U5 tri-SnRNP related factors
105962564
Ribosome biogenesis [BR:
egt03009
]
Eukaryotic type
Pre-60S particles
Helicases
105962564
Transfer RNA biogenesis [BR:
egt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105962564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
M-factor
Motif
Other DBs
NCBI-GeneID:
105962564
NCBI-ProteinID:
XP_012842334
UniProt:
A0A022R112
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MGSVKRKSTKEAGEDYGTPPLKQQRENDSVVGITDEPVACLHDVSYPEGYVPRASSSSVL
NNEDSKPAKEFPFTLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNKQRV
IYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVIRE
VAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCH
IVYTDYRPTPLQHYIFPSGGDGLYLVVDENGKFREDSFQKGLNALIPNNDDRKKENGKWQ
KGLVVGKSGEDSDIFKMVKMIILRQYDPVICFSFSKRECELLAMQMAKLDLNDDDEKLNT
ETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLF
ATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVD
EKLEPSTAKMMLKGSADPLNSAFHLSYNMLLNQIRSEDGDAENLLRNSFFQFQADRAIPE
LEKQAKVLEEERESITIEEEDSLENYYSLLQQYKALKKDICEIVFSPKHCLPFLQPGRLV
SIQCTKNDEDSSSFSMKDEITWGVIINFERVKTVSEDDANKKPEDASYTVDVLTRCRVHK
DEIAKKTIKILPLKDPGEPAVISIPISQIDSLSSIRLIIPKDLLPVEARENTLKKISEVL
TRFAKEGMPRLDPEDDMKVQSSSYRKASRRIEALESLFEKHEIAKSPLIEQKLKVLHSKK
ELTTKIKSIKKTLKSSSVLAFKDELKARKRVLRRLGYISSDDVVELKGKVACEISSADEL
TLTELMFNGVLKDVKVEEMISLLSCFVWQEKLQEAQKPRDELDLLFKQLQDTAGKVAKVQ
FECKVQIDVENFVSSFRPDVMEAVYAWAKGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQ
LIQAAKSIGETDLEVKFEEAVTKIKRDIVFAASLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggggtcagtgaagaggaagtctacgaaagaggcgggggaggattacgggactccgcca
ttaaagcagcagagagagaatgactcggtggtggggataacagacgagccagttgcttgt
cttcacgacgtatcgtatccggaggggtatgtgccgcgtgcgtcaagttcgagtgttctt
aacaacgaagactcgaaaccggccaaagaatttcctttcactcttgacccttttcagttg
gaagctattaagtgcctcgacaatggagaatccgtcatggtgtctgcgcatacttctgct
ggtaaaacagttgtagcgttgtatgccattgctatgtcgttgaggaacaagcagcgtgtg
atatatacatcaccgattaaggcacttagtaatcagaaataccgagagttcaaagaagag
ttttcagatgtggggttgatgacaggtgacgtcaccatcgatcccaatgcttcttgcttg
gttatgactacagaaatctggcgaagcatgcagtacaaaggatcggaggttatacgggag
gtagcttggattattttcgatgaagtgcattacatgagagacagagagagaggtgtagtg
tgggaggagagtatcgttatggcaccaaagaactctcggtttgttttcctctcagctact
gtgccgaatgcgaaggagtttgctgattgggttgcaaaggtacatcagcagccatgtcat
attgtttatactgattatcggcctacaccccttcagcattacatttttccttctggaggc
gatggtctttatttagtggttgatgaaaacggtaagtttcgagaggatagctttcagaaa
ggtttaaatgcactcattccgaacaatgatgacagaaagaaggagaatggaaaatggcag
aaaggcttagttgtgggtaaatcaggagaagatagtgatatatttaagatggtgaaaatg
atcattctccgacagtacgatcctgtcatatgtttcagtttcagcaaaagagaatgtgaa
ttgcttgctatgcagatggctaaattggacctaaacgatgacgatgagaaactaaacaca
gaaaccattttctggagtgctatggacatgctgtcagatgatgataaaaagttaccacag
gtttcaaatatgcttcctttgttgaaacgaggaataggtgtacatcactctggtttgctt
cccatactgaaggaagtcattgaaatcctgttccaggaaggattcatcaagtgcttgttt
gccacagagaccttcagcatagggctgaacatgcctgccaaaactgttgtcttcagtaac
gttcgcaaattcgatggagataaatttaggtggttatcgagtggggagtacatacaaatg
agtggtcgtgctggtcgtcgaggaattgatgaacgcgggatatgcattcttatggtcgat
gagaagcttgaaccttctacagcaaaaatgatgttaaaaggaagtgcagatcctttaaac
agtgcatttcacttaagctacaacatgcttttgaatcaaatacgatccgaagatggtgat
gccgaaaacctgcttcgtaactctttctttcagtttcaagctgatcgagccattcccgag
cttgagaaacaagcaaaagttctcgaggaggagagggagtccattactattgaagaagaa
gatagcctagaaaattactactcattgctacaacagtataaagctttgaaaaaggacata
tgtgaaatagtgttttctccaaaacattgcttaccctttctgcagcctggcaggcttgtc
tctatccaatgtacgaaaaacgatgaagattcctcgtctttctctatgaaagatgagatc
acatggggagtcatcatcaattttgagagggttaaaacagtttctgaagatgatgcgaat
aaaaaaccagaagatgcaagctatacggtggatgttttaacgagatgtagagtgcataag
gacgaaattgctaaaaaaacaatcaagatccttcctttgaaggatcccggtgaacctgct
gttatttcaattccgatttcacagattgatagtttaagtagtattcggctaataataccg
aaagatctgctgccagtagaagctcgggaaaatacattgaagaaaatttctgaagttctc
actcgatttgcgaaagaaggcatgcctcgtctggatcctgaagatgacatgaaggttcaa
agtagttcttatagaaaagcttcacgaaggatagaagcactggaaagtctttttgaaaag
catgaaatagccaaatcgccgctgattgagcaaaagctcaaagttcttcattctaagaaa
gaacttacgacaaaaatcaaatctataaagaaaacattgaagtcttcctcagttttagca
ttcaaagatgaacttaaagcaaggaaaagagtactccgaagactcggatatatttcaagc
gatgacgtggtggagttaaaggggaaagttgcatgcgaaattagcagtgcagatgaattg
actttgacagaacttatgttcaatggagttctgaaagacgtaaaagtggaggagatgata
tctcttctctcgtgttttgtgtggcaagaaaagcttcaagaggctcaaaagccacgagac
gagcttgacttgctcttcaagcaattacaggatacagccggtaaagtggccaaggttcag
ttcgagtgcaaggtacaaattgatgtcgagaattttgtgagttcattcagaccagatgtt
atggaggccgtttatgcttgggctaaagggtcgaaattttacgagataatggaaatgact
ccggttttcgagggaagcttgataagggcaattaggagattggaggaagttcttcaacag
cttatacaagcagcaaaatcaatcggtgagacagatcttgaagttaaatttgaggaagcc
gtcactaagatcaagagggatattgtctttgcggcatctttatacttatag
DBGET
integrated database retrieval system
