Elaeis guineensis (African oil palm): 105032755
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Entry
105032755 CDS
T03921
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
egu
Elaeis guineensis (African oil palm)
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
egu04812
]
105032755
Cytoskeleton proteins [BR:
egu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
105032755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Katanin_con80
WD40
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
EIF3I
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_Aladin
WDR90_beta-prop_4th
eIF2A
Beta-prop_SPT8
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_ACSF4
VPS8_N
Motif
Other DBs
NCBI-GeneID:
105032755
NCBI-ProteinID:
XP_010905604
UniProt:
A0A6I9QA89
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Position
6:21876412..21891806
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AA seq
839 aa
AA seq
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MAKRGYKLQEFVAHTSDVNCLNIGKKSSRVFVTGGDDRKVNLWAIGKPTPLLSLCGHTSA
VESVAFDSAEVLVLAGSSNGSIKLWDLEEAKIVRTLSGHRFNCTSVEFHPFGEFFASGSS
DTDLKIWDIRKKGCIHTYKGHTRGIRTIKFTPDGRWVVTGGEDNVVKVWDLTAGKLLHDF
KFHKGQIRCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPEVTGVRSMIFHPDGRT
LFCGLDVTLKVFSWEPIRCHDVVDMGWSTLGDLSIYEGKLLGCSYHESRVGVWVADISLI
GPYAVGVVSKTYDLMEPVYSNGEDHSTKLMESNIKSSTALITGHHDFGGKPKESVLQGIN
STYASSMASMNSTDVKRNKSAISHSTPQGFDRKSTSKASAVNSTTFRVVKATESPSNTLN
RMESGFATRPISSCSTVMSMHNSLTLRKGSMMEANAVMDVQAIANPVSMPVVVPRDSLNQ
DTPGSSRKVIADTEATTQGSMLCKPTQMRKPSFLGGCSEGELIATVSGPLSGMSNNLGVL
DPKLLSKTAVSQEAAEADEGNHRRTKSIAEKFEKIMLLEEPLQVYTDKNAEAPCSNSETN
SVKYVRGVAVQLGRTRSLVESWEKRERFNSGYSATISSSSDPAHSNDTSASLLKAPEKTS
ERDVMSADDDFVPDILLQNHNVFINAVKSRLTKLQAVRHFWEQNGIKGAINAVVKLPDHS
VQVDLISILKEKIDLFTLELFSCLLPLLVGLLNSRTERHLIVALEMLLELVKIFGPVIHS
TMSASSLVGVDLQAEQRLERCSNCFNHLEKIKQMLPSLIRREGLLGRHAQELNLFLLDL
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgcggttacaagctccaggaattcgtagcacatacatctgatgtaaactgt
ttaaatattggaaagaaatcaagcagagtttttgttactggtggtgatgatcgcaaggtg
aatctatgggcaattggcaaaccaactccattgctgagcttatgtggtcacactagtgca
gttgagtctgtagcatttgattcagcggaggtcttggttcttgcaggatcttccaatggt
tcgattaagctgtgggatttggaagaggcaaagattgtacgcactcttagcgggcacaga
ttcaattgtacctctgttgaattccatccatttggtgagttctttgcatccggttcttcg
gacaccgatctcaagatttgggatattagaaaaaagggatgcatccacacctacaagggc
cacacacgcggaattcgaacaatcaaatttactccagatgggcggtgggttgttactggt
ggagaagataatgtagtgaaggtatgggatttgaccgcagggaaacttcttcatgacttt
aagttccataaaggacaaatccggtgcatagattttcatcctcatgagtttttacttgca
acaggttcagctgatcgaactgtaaagttttgggacctagaaacatttgaactaataggt
tctgcagggccagaggttactggggtacgctccatgatctttcatcccgatggacgaact
ctattttgtggtttggatgtaaccctaaaggttttctcctgggagcctataagatgtcat
gatgttgttgatatggggtggtctactttgggtgatctcagtatttatgaaggaaaactt
ttgggatgctcctatcatgaaagtcgtgttggagtttgggttgctgatatatcactaatt
ggaccatatgctgttggtgtggtgtcaaaaacatatgatcttatggagcctgtatatagt
aatggggaagatcattctaccaagctgatggaaagcaacataaaatctagtactgcactg
attacaggacatcatgactttggaggtaaaccaaaagaaagtgtcctacaagggatcaat
tctacttatgcttcaagcatggcttcaatgaattcaactgatgtcaaaaggaataaaagc
gccataagccatagtactccacaaggatttgatcggaagtctacttccaaagcatccgct
gtgaattctactacattcagggttgttaaagctacagagagcccttctaatactctgaac
agaatggaatcaggttttgcaacaaggccgatctcatcatgttcaactgtaatgagtatg
cataattcattaaccttgaggaaaggctcaatgatggaggcaaatgcagtgatggatgtc
caggcaattgctaatcctgtatccatgcctgttgttgtaccaagagacagtttaaaccag
gacactcctggtagttctagaaaagtaattgcagacactgaagcaacaactcagggttcg
atgctctgcaaaccaactcaaatgcggaagccatcttttcttggtggttgtagtgagggc
gaattgattgcaactgtatccgggcctttgagtggcatgagtaataatttaggtgttttg
gacccaaagttactctccaagacagctgtgagccaagaagctgcagaagctgatgaagga
aaccatagaaggaccaaaagcattgcagaaaaatttgaaaaaataatgttattggaggag
ccgttacaagtatatactgacaaaaatgctgaagcaccatgctctaacagtgaaacaaat
tcagtcaaatatgtcagaggagtggccgttcaacttggaaggacacgatctctagttgaa
agctgggaaaaaagagaaagatttaatagtggttactcagcaacaattagttcttcctct
gacccagcccacagcaatgacacttcagcatctttgcttaaagcaccagagaaaacctct
gaaagggacgtgatgtcagcggatgatgattttgttccagatatactattgcaaaaccat
aatgtattcattaatgctgtaaaatctcggctaacaaagttacaggcggtgaggcacttt
tgggaacaaaatggtattaaaggtgcaatcaatgcagtagtgaagttgcctgaccattct
gttcaggtagatcttatcagtattctcaaggagaaaattgacctttttactcttgaactt
ttctcgtgcttgcttccgcttcttgtgggtttattgaacagcaggactgaaaggcacctt
attgtcgccctggaaatgctattggagcttgtgaagatctttggaccggttatccattca
acaatgtcggcatcttcactagtaggggttgatcttcaggcagagcagaggttggagcgt
tgcagtaactgcttcaaccacttggaaaagataaaacaaatgctcccttccctgattaga
agagaggggctgctaggaagacatgctcaggaattgaatctcttcttgcttgacttatga
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