Elaeis guineensis (African oil palm): 105033482
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Entry
105033482 CDS
T03921
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105033482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105033482
03041 Spliceosome [BR:
egu03041
]
105033482
03009 Ribosome biogenesis [BR:
egu03009
]
105033482
03016 Transfer RNA biogenesis [BR:
egu03016
]
105033482
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105033482
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105033482
Spliceosome [BR:
egu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105033482
Complex C
U4/U6.U5 tri-SnRNP related factors
105033482
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105033482
Transfer RNA biogenesis [BR:
egu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105033482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
105033482
NCBI-ProteinID:
XP_010906612
UniProt:
A0A6I9QBI4
LinkDB
All DBs
Position
12:complement(18590741..18603919)
Genome browser
AA seq
991 aa
AA seq
DB search
MASVKRKTLEEPAADLARPQKAAREEPEPAYVDEPVSCLHDVSYPEGYVPTRPSTSHPTG
EKPKPAKEFPFELDPFQSEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRDQQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPSASCLVMTTEIWRSMQYKGSEIMREVA
WIIFDEVHYMRDRERGVVWEESIVMAPKNSHFVFLSATVPNAKEFADWVAKVHRQPCHIV
YTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALIPAGEGGKKRENGKWQK
GIVAGKPSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKVNIE
TIFWSAMDLLSDDDKKLPQVTNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDQRGICILMVDE
KMEPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRSEDGDPEKLLRYSFYQFQADRALPDL
EKQVKELEIERDSMIIEEEESLKDYYDLLQQYRSLKNDVRDVVFSPKYCLPFLQPGRLVR
IQCTNGDKNPSFSTDALVTWGVIINFEKVKIPGEDKRPEDADYTVDVLTRCVVNKEVGSK
KTMKIVPLNERGEPAVVSLPLSQFESLSSIRLFIPKDLLPLESRENTLKKVSEVLSRFAK
DGIPLLDPEEDMKVQSNSYRKAVRRIEALESLFDRHEIRNSPLIQQKLKVLHAKHELTAK
IKSIKKTMRSSTVLAFKDELKARKRVLRRLGYITSEDVVELKGKVACEISTADELTLTEL
MFSGVLKDVNVEEMVALLSCFVWQEKLQDAQKPREELDLLFSQLQETARRVANVQLECKV
QIDVENFVNSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLNLAS
KSIGETELESKFEEAVTKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggtgaagagaaaaaccctagaagagccggccgcggacctcgcccggcctcag
aaagcggcgagggaggagccggagccggcctacgtcgacgagccggtgtcctgcctccac
gacgtctcctacccggagggctacgtcccgactcgcccgtccacctcccaccccactggc
gagaagcccaagccggccaaggagttcccctttgagctcgacccctttcagtccgaagcc
atcaagtgccttgataatggcgaatctgtcatggtatcagcacatacgtcagcagggaag
acggtggttgctttgtatgctatcgcaatgtccttgcgagaccagcaacgggtcatctat
acatctccgatcaaggctcttagcaaccaaaagtatagagaatttaaagaggagttctct
gatgttggtctcatgacaggggatgtgacaattgagcctagtgcctcatgcctggtcatg
accactgaaatttggcgaagtatgcagtacaaagggtcagagatcatgcgggaggtggct
tggataatttttgacgaagtccattacatgcgagacagggagagaggtgttgtttgggaa
gagagtattgtaatggctccaaagaactcacattttgtatttctctctgcaacagttcct
aatgcaaaggaatttgctgactgggttgcaaaggttcatcggcagccttgtcacattgtt
tatactgattatcgacctacacctctacagcactacatttttccatctggtggtgatggc
ttatatttggtggtggatgagaagggaaaatttcgagaagacagttttcaaaaagcttta
aatgcacttattcctgcaggtgaaggtgggaagaaaagggagaatgggaagtggcagaag
ggaatagtagcaggcaaacctagtgaggagagtgacatatttaagatggtgaagatgata
attcagcgccagtatgaccctgtcatactcttcagctttagcaaaagggaatgtgaattt
ctggcaatgcagatggcaaagatggacttaaatgaagatgatgagaaagtgaatattgaa
accattttttggagtgcaatggatctgctttctgatgatgataagaagcttccccaggtt
acaaatatgctaccacttttgaaacgtggaattggtgtacatcattctggtctacttcca
attctgaaggaagtgattgaaattctctttcaagaaggcctcatcaagtgtttgtttgcc
acagaaacctttagtataggtctgaacatgcctgccaaaactgtggtttttacaaacgta
cgcaaattcgatggcgataaattcagatggatatccagtggagagtatatccagatgagt
ggccgtgctggacgacgaggtatcgatcagcgtggcatttgcattctaatggtggatgag
aaaatggagccgtcaacagctaaaatgatgctcaaaggaagtgcagattgtttaaacagt
gcgttccacctgagctacaacatgctgttaaaccaaatgcgtagcgaagatggtgatcca
gaaaaacttcttcgatactcgttttatcagtttcaagctgatcgggcccttcctgatctt
gagaaacaagtaaaggaattggaaatagagagagactctatgattatcgaagaagaggag
agcttgaaagattattacgatctcttacagcagtacagaagtttgaagaatgatgtccgt
gatgttgtattttccccaaaatactgtttaccattcctgcagcctggcaggcttgtgcgc
attcaatgcactaatggtgacaagaatccatctttctcaacagatgctttagtgacatgg
ggagtgattattaattttgaaaaggtgaaaatccctggtgaagataaaagacctgaggat
gctgattatacagttgacgtcctcacaaggtgtgttgtgaataaggaagtgggttcaaag
aaaaccatgaagattgttcctttaaatgagcgtggagaacctgctgtggtttcattgcct
ctttctcagtttgaaagtttaagcagcatccgtctgttcatacctaaggatctgttgcca
ctagaatctcgggagaatacattgaaaaaggtttcagaagttctttccaggtttgccaaa
gatgggatacctcttttagatcctgaagaggatatgaaagtacaatctaattcatataga
aaagctgttagaaggatagaagctctagagagtctatttgacagacacgaaatccggaat
tcaccacttatccaacaaaagctgaaagttctgcatgcaaagcatgaattgactgctaaa
atcaagtcaatcaagaaaacaatgcgttcttcaacagtgcttgccttcaaggatgaactg
aaggcacggaaacgagttcttcgcaggctgggatatattaccagtgaagatgttgtagag
ttgaagggcaaggttgcctgtgagatcagcactgctgatgaattaacactaacagagctt
atgttcagtggggtactgaaggatgtgaatgtggaggagatggttgcacttctctcatgt
tttgtatggcaggagaagctccaggatgcccagaaaccaagggaagagctcgaccttctt
ttctctcagctgcaagagacagcaagaagggttgccaatgttcagcttgagtgcaaggtc
caaattgatgtggagaattttgtgaattcttttcgccctgatatcatggaagcagtgtat
gcatgggcaaaaggatccaaattctacgaaatcatggagattacacaagtttttgaaggt
agcttaatcagggccattagaaggctcgaggaagttctgcaacagctaaatttggcatcc
aaatccattggagagactgaattggaatcaaaatttgaagaggcggttactaagatcaag
cgtgatatagtatttgcagcatctttgtatttgtag
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