Elaeis guineensis (African oil palm): 105033889
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Entry
105033889 CDS
T03921
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105033889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105033889
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105033889
mRNA degradation factors
5'-3' decay
Decapping complex
105033889
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
105033889
NCBI-ProteinID:
XP_010907163
UniProt:
A0A6I9QE37
LinkDB
All DBs
Position
2:complement(4564830..4579078)
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AA seq
821 aa
AA seq
DB search
MGGLDGEGGVSENPNPNDDLTELGAGAADNARFDASQYAFFGKEAMEEVELGGLEDDDGG
DDAGLIRLDDEEYRFSSIGDREEVEGLGSLSDIDDLTSTFAKLNRTISDPRSAGVIGDRR
SFSRESSSTADWMQEADFSNWIDENILDAEHFQDGKRWWSQPRPSSSRLSESKSLYRTSS
YPQQQPQQHSSEPILTPKSSFTSYPPPGGRSHISPNLTRHASIPSLTAGLQMTPPNLSPF
SGPQHHLAGLMHGLHYGGNMSQFASPGLSFNNRPQHHWLNQASLFAGEHPNLLPNFLQQH
LPQPNGSVPSQLLLQQQQQRVQQVQPCLPHFSRLQSPLVSSHPPEIMNKLDAVLGISDLR
DQRSKPSQRGKQNMRFPQQSSDTSSQKGDNGWPQFRSKYMSAEEIESILRMQNAATHSND
PYIDDYYHQACLAKKSAGSRLKNHFCPTFIRDLPSRARANNETHAFLQVDALGRVAFSSI
RRPRPLLEVDLPSASGDGVHEQKSSVKPLEQETMLAARITIEDGLCLLLDIDDIDRMLQF
SQPQDGGFQLRRRRQVLLEGLAASLQLVDPLGPVKAGHSGGLAPKDDLVFLRLASLPKGR
KLLSRYLQLLIPGSELTRIVCMAVFRHLRFLFGGLPSDSSAAETTINLAKTVSSCVCSME
LSALSACLAAVVCSSEQPPLRPLGSSAGDGASMILKSVLDRATDLLTEPHATSNYSMSNR
ALWQASFDAFFGLLTKYCLSKYDSILQMLLMQALDTSIIGSEAARAISREMPVELLRASL
PHTNEHQRKMLLDFAQRSMPVTGFSVHGSGSGPVTSESVPG
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgggggggctcgatggagagggtggggtttcggaaaaccctaaccctaacgacgatctc
acagaattgggcgctggtgctgcagataatgctcgctttgatgcatcacagtatgcattc
ttcggtaaggaggccatggaggaagttgagttagggggtttagaagatgatgatggtggt
gatgatgctggacttattaggcttgatgatgaggaataccgttttagttctattggagat
agagaagaggttgaaggtttgggatctttatctgatatagatgatcttacgagcactttt
gccaagttgaacagaactattagtgacccaagaagtgctggggttattggtgatagaaga
tctttttctagagaaagctcttcaactgcagactggatgcaggaggcagatttttcaaac
tggattgatgagaatatattagatgctgaacattttcaggatggtaaacgatggtggtca
caaccacgtccttcgtcatctcgtctttcagaatcaaaatccctgtatagaacatcctca
tatcctcaacaacagccacaacaacactccagtgaaccaattcttacacctaaatcatct
ttcacatcctaccctccacctggtggacgatctcatatttcaccaaacctcacacgtcat
gcaagcattccatccctaactgctgggcttcagatgactcctccaaatctctcacctttt
tctggtccacaacatcatttggcaggactaatgcatggattgcattatggtggaaacatg
tctcaatttgcctctccaggcctctcttttaataaccggccgcagcatcactggttaaat
caagccagcctatttgcaggggaacatccaaatctgctgcctaacttcctacagcaacat
ttgccacagccaaatggctcagtgccttcacaactacttctgcagcagcaacagcagaga
gtgcaacaggtccaaccatgtctgcctcatttttctcgcttgcagtctcccttagtcagc
tcccatcctccggaaataatgaataagcttgatgcagttcttggtatatctgacttgaga
gaccagagatctaaaccatcacaaagaggaaaacagaacatgcggtttcctcaacaatct
tctgataccagcagccagaagggtgacaatgggtggccacagtttaggtccaagtacatg
tcagctgaagagattgaaagcattttgagaatgcagaacgctgcaactcacagcaatgat
ccatatatagatgattactatcaccaagcttgtcttgcaaaaaagtctgctggttcaagg
ctgaagaaccatttctgtccaacatttattcgagatctgccttctcgggcaagagctaat
aatgagacacatgcatttcttcaggttgatgcacttgggagggttgcattttcatccatt
cgtaggcctcgccctctccttgaagttgatctgccttcagcctcaggtgatggcgtccat
gaacagaaatcttcagtaaagccccttgaacaagagacgatgctggcagctagaatcacc
attgaagatggtctttgcctcctccttgatatagatgatattgaccggatgttacagttt
agccaaccacaagatggtggcttccagctgagacggaggagacaagtccttttggaaggc
cttgcagcatctcttcagctcgttgatccacttggcccagttaaggctggtcactcaggt
gggcttgccccaaaagatgatcttgtgtttcttcgcctagcatctcttcctaagggccgg
aagcttctgtcacgctaccttcagcttcttattcctggcagcgagctcactcggatagtc
tgtatggccgttttccggcacctacgttttctatttggtggtttgccatcagattctagt
gcagcagaaacaacaataaatcttgccaagactgtttcttcatgtgtatgcagtatggag
ctaagtgcactcagtgcttgccttgcagctgtcgtttgctcatctgaacagccacctctt
cgcccacttgggagttcagctggtgatggagcatcgatgattttaaaatctgttctcgac
agagcaacagaccttttgacagaaccccatgctacaagcaactacagcatgtctaaccga
gctctttggcaagcatcatttgatgccttttttgggcttcttaccaagtattgtctgagt
aaatatgacagtatattgcaaatgttgctcatgcaggcacttgacacttcaatcattggg
tctgaagctgccagagctataagcagggagatgcctgtggagctgctacgtgcgagcctg
cctcatacaaatgagcaccagcgcaagatgttgcttgattttgctcagagatccatgcct
gtaactggttttagcgtccatggaagtggcagtggtcctgtgacctcggaatcagttccc
ggctaa
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