Elaeis guineensis (African oil palm): 105034827
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Entry
105034827 CDS
T03921
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105034827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105034827
03036 Chromosome and associated proteins [BR:
egu03036
]
105034827
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105034827
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105034827
mRNA degradation factors
5'-3' decay
Decapping complex
105034827
Chromosome and associated proteins [BR:
egu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105034827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
NA-iREase2
Aldedh
Motif
Other DBs
NCBI-GeneID:
105034827
NCBI-ProteinID:
XP_010908424
UniProt:
A0A6I9QFR1
LinkDB
All DBs
Position
11:61115125..61170132
Genome browser
AA seq
482 aa
AA seq
DB search
MNSRGGRYPPGNGNGRGGSMGGNPNFYARNSQQQQQYVQRNPLQGQHNQQQQWLRRNLMG
GDSGTSEVVKSVQSDSIDSSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELL
MGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVV
ILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRVLDL
AKKGVCILKDCSMLIMDEADKLLSPEFQPSVEQLIRFLPANRQILLFSATFPVTVKDFKD
RYLAKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL
LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF
DFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAVY
CR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcgaggtggtagataccctcccggaaacggcaacggccgtggagggagcatg
ggcggaaaccctaacttctatgcgagaaactctcagcaacagcagcaatatgtccagcgg
aatccattgcagggccagcataatcagcagcagcagtggttgagaaggaatctgatggga
ggcgattctggaaccagcgaagtagtgaaatcagttcagtctgatagcatcgattccagt
tctcaagattggaaggcacggttgaaggtcccacctcctgatacacgctacaagacagag
gatgtcactgcaactaaaggaaatgaatttgaagactattttctgaagcgagagctactt
atggggatatatgagaagggatttgaaaggccttcaccaatccaagaagaaagtatacca
attgctctgactggaagtgatatccttgctagagctaagaatggaactgggaagacagct
gcattttgcattcctgcattggaaaaaattgatcaagataacaatgttattcaagttgtc
atattggttcctacaagagaattagctctccaaacttcacaagtctgtaaggagcttgga
aagcatttaaagattcaagttatggtcactactggaggaaccagcttgaaggatgacatc
atgcgtttgtatcagcctgttcatttgcttgttggaacacctggccgagtacttgatctt
gcaaagaaaggtgtctgtatcctgaaggattgttcaatgcttattatggatgaggcggat
aagcttctttctcctgagtttcaaccttcagtagagcagctgattcgtttccttcctgca
aatcggcaaattttactgttttcagcaacattccctgtaacggtcaaggatttcaaagac
agatacttagcaaaaccttatataattaatcttatggatgaactcaccctgaagggaata
acacaatactatgcttttgttgaagaaaggcagaaggtccactgccttaatacccttttc
tcaaagctccaaattaaccaatctattatattttgcaactcggttaatcgggtggagtta
ttggctaagaaaatcaccgagcttggttattcttgcttctatattcatgctaaaatgttg
caagaccatcggaatcgagtcttccatgacttccgcaatggtgcatgcagaaatcttgtt
tgtacagatctgttcacaaggggaattgacattcaagctgttaacgttgtaatcaatttt
gactttcccaagaacgcggaaacctatctgcacagggttggtcgctcggggagatatggc
catcttggtttagcagtgaacttgatcacctatgaggaccgcttcaacctgtataggatt
gaacaagaacttggtactgaaattaaacagattcctccacaaatagaccaagctgtatac
tgcaggtga
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