Elaeis guineensis (African oil palm): 105034944
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Entry
105034944 CDS
T03921
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105034944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105034944
03012 Translation factors [BR:
egu03012
]
105034944
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105034944
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105034944
Translation factors [BR:
egu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105034944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
HA2_C
DEAD
HA2_N
Ank_2
ATPase
AAA_22
AAA_19
Ank_5
nSTAND3
AAA_23
Rad17
ABC_tran
Motif
Other DBs
NCBI-GeneID:
105034944
NCBI-ProteinID:
XP_019702707
UniProt:
A0A6J0PCR2
LinkDB
All DBs
Position
6:complement(120578552..120600661)
Genome browser
AA seq
1209 aa
AA seq
DB search
MGRKGQKKGKGGEQRSSIVTEATRIRIDKVLQDFRVSDAEVYTFEPGLSKHERAAIHEMC
RKMGMVSKSSGYGERRCLSVYKNRKKQGAVKNEDETVTCLKFSEETKNVLQDLFTCFPPD
DGELSEKALRNSSEKGGKRPWKQGTSFCKPSINKSEIAKKVDLLASKISDSAQLRKIMED
RAKLPIASFKDVITSTLETDQVMLISGETGCGKTTQVPQYILDHMWGKGEACKIVCTQPR
RISAISVAERIAYERGETVGENVGYKIRLESKGGKNSSIMFCTNGVLLRLLISRGANSSK
AETGNRSLEDSIMGITHIIVDEIHERDRFSDFMLAILRDLLPSYPHLRMVLMSATIDAER
FSKYFNGCPIIQVPGFTYPVKTFYLEDVLSVLKSADDNHLNPVAISGVEEGTPLTEDYKN
ALDESINLALANDEFDPLLELISTEQTPKVYNYQHSLTGASPLMVFAGKGRVGDVCMLLS
FGADCSLCANDGSTALDWAQQENHLHVCEIIKKHMEKAISKSAEEEELLSEYLASINPEH
IDTVLIERLLRKICTDSKEGAILVFLPGWDDINQTRERLLASPFFRDPSKIVILSLHSMI
PSAEQKKVFKCPPAGVRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQS
SWVSKASARQREGRAGRCQPGTCYHLYSRTRAASLPEYQVPEIKRMPIEELCLQVKLLDP
DCRIVDFLQRTLDPPVPETIHNAIIVLQDIGALTDDEKLTDLGEKLGSLPVHPSTSKMLL
FAILMNCLEPALTLACAADYREPFILPMAPDERKRAAVAKLELASLYGGYSDQLAVVAAF
DCWKCAKDRGQESQFCSKYFVSSNTMNMLSSMRKQLQSELAKNGFIPSDISSCSLNARDP
GILRAVLMAGTYPMVGRLLPRRKNGGKRAIVETASGAKVRLHPHSSNFNLSFSKSAGSPL
IIYDEITRGDGGMYIKNCSLVGPYPLLLLAMEMVVAPANDDDESDEDEESSSGEEDEMET
NTSSGQHGEEIMSSPDNIVSVIADRWLRFESAALDVAQIYCLRERLSAAILFKVKYPQEV
LPPALGASMYAIACILSYDGLPSMVPVDESMEPQTSKANATDMKQERRAIGYVSPGKFLR
FLASDQAQNKSNFHKMREPMHGSAILTYSAPHTLVDRFQQQRTPLNGHGSGGSGPRIRSF
KRQRENGCR
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaaggggcagaagaaggggaagggaggggagcagcggtcgagcatcgttacc
gaggccacgcgcattagaatagacaaagtcctccaggattttcgagtgtcagatgccgaa
gtctacaccttcgaaccgggtttgtcaaaacatgaacgagctgcaattcatgaaatgtgc
agaaaaatgggtatggtgtcaaaaagttctgggtatggagaacgtagatgcctttcggtt
tacaaaaacagaaagaaacagggagctgttaagaatgaagatgagactgttacttgcttg
aaattttcagaagaaacaaaaaatgttttacaggacttatttacatgttttcctcctgat
gatggagagctgagtgaaaaagcactcaggaattcaagtgaaaagggtggtaaacgacca
tggaagcagggtactagcttttgcaaaccatcgataaacaagtctgaaattgcaaagaag
gtggatctgcttgcatctaaaataagtgattctgcacagctgagaaagattatggaagac
agagctaaacttccaattgcatccttcaaggatgtcatcacatcaacattggaaactgat
caggttatgctgatatctggtgagactggttgcggtaaaactactcaggtccctcaatat
atcttggatcatatgtggggaaaaggcgaggcatgtaaaattgtatgcacacaacccagg
cgcatatcagccatttcagttgctgagaggattgcttatgaaagaggggaaactgttgga
gaaaatgttggttataagatacgtctggagtctaaaggtgggaaaaactcatcaataatg
ttctgcactaatggagttcttttgagattattgattagcagaggtgcaaattcatccaag
gcagaaacaggaaacaggtcattggaggatagtatcatgggaataacccacattattgtg
gatgaaattcatgaaagggacaggttttctgattttatgctggcaattctcagagacctc
ttgccttcataccctcatctacgaatggtactcatgagtgctactattgatgctgaacga
ttttcaaagtatttcaatggatgccccattattcaggtcccggggttcacatatcctgtc
aaaactttctatttggaggatgtgctttctgtcttaaaatctgcagatgataatcatctg
aatcctgtggccataagtggtgtggaggaaggtactccattgacagaagactacaaaaat
gccctagatgaatcgatcaatctagctttagcaaatgatgaatttgaccccctgttagag
ctaatttctaccgagcaaacaccaaaagtctacaattaccagcattcgttgactggtgca
tcaccattgatggtgtttgccgggaaaggtagagtaggagatgtatgcatgctcctgtca
tttggtgctgactgctctttgtgtgccaatgatggaagcactgcactggattgggctcag
caagaaaatcatctccatgtctgtgaaattattaaaaaacacatggagaaagctatatct
aagtcagcagaggaggaggagctactgagcgaatacctagcaagcattaacccagagcac
attgacactgtactaatagagaggttattgagaaaaatttgtactgattccaaggaagga
gctatcctagtttttcttccaggatgggatgacataaatcaaaccagagagagattgctt
gcatctccattttttcgagatccatcaaagattgtgatactctctctccactctatgatt
ccgtctgcagagcagaagaaagttttcaaatgtccacctgctggagttcgtaaaataatc
ctctcaactaacattgcagagactgctgttaccattgatgatgttgtatatgtcatagac
agtggtcggatgaaagagaaaagttatgacccttataacaatgtatctactctgcaatct
tcttgggtttcaaaagctagtgcaaggcagcgtgagggacgtgctggtcgttgtcagcca
ggaacttgttaccatctgtactcgagaacacgtgcagcatctctgccagagtaccaagtt
cccgaaataaagcggatgccaattgaggaactttgtttgcaggtcaagttgcttgatccc
gattgtagaatagtagactttttgcagagaactttggaccctccagttccagaaactatc
cataatgcaatcattgttcttcaagacattggtgccttaacggatgatgaaaagcttaca
gatctcggagaaaagcttggttccctccctgttcatccatcaactagcaagatgctatta
tttgctatcttaatgaattgcctagaacctgcattaacactagcatgtgcagcagattac
agggagccctttattctgccaatggctccagatgagaggaagagagctgcggtggccaaa
cttgagttggcttccttgtacggtgggtatagtgatcagcttgctgtagttgcagcattt
gattgttggaagtgtgcaaaagacagaggtcaagaatctcagttctgctccaagtatttt
gtctcttcgaacaccatgaatatgttgtctagcatgcggaagcagcttcagagcgaactg
gcaaaaaatggttttataccttcagatatatccagttgtagtttaaatgctcgagatcca
ggtatcctgcgggctgtcctcatggctggtacttatccaatggtgggaagattgctcccc
cgtcgtaagaatggtggtaaaagagctattgtggagacagctagtggtgccaaagtccgc
ttgcatccacattcttccaacttcaacttatcgtttagtaaatctgctggtagcccactt
ataatttatgatgagattacccgtggagatggagggatgtacataaaaaactgttctctg
gttgggccatacccattgttattacttgcaatggagatggttgttgctcctgcaaatgat
gatgatgaaagtgatgaagatgaagaatcttccagtggtgaggaagatgagatggagacg
aacacatcttctggacagcatggagaggagatcatgtcttctcctgataacattgtatca
gtcattgctgacagatggctaagatttgagtcagctgcacttgatgttgctcagatttac
tgcttacgagaacggctatctgctgctatcttattcaaagtcaaatatccacaggaagtt
ctacctcctgcacttggagcatccatgtacgccattgcttgtattctttcatatgatgga
ttgccgagtatggtgcctgttgacgaatcgatggaaccccaaacatcaaaggcaaatgct
acagacatgaagcaggaaagaagagcaattggctatgtttctcctggcaagttccttaga
tttttggcatcagatcaagcccaaaataaatctaatttccacaagatgagggaaccaatg
catggtagtgccatcttgacatactctgcaccgcataccctggttgacaggttccaacaa
caaagaactcccttaaatgggcacggttcaggtggttccggaccaaggatccggtctttc
aaacggcagcgtgaaaatgggtgccggtga
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