Elaeis guineensis (African oil palm): 105035290
Help
Entry
105035290 CDS
T03921
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03420
Nucleotide excision repair
egu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105035290
09124 Replication and repair
03420 Nucleotide excision repair
105035290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
egu04121
]
105035290
03400 DNA repair and recombination proteins [BR:
egu03400
]
105035290
Ubiquitin system [BR:
egu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105035290
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
105035290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_EIPR1
WDR90_beta-prop_4th
WD40_RFWD3
ANAPC4_WD40
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
TAF6_C
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
105035290
NCBI-ProteinID:
XP_010909112
UniProt:
A0A6I9QGD5
LinkDB
All DBs
Position
3:47895446..47933953
Genome browser
AA seq
466 aa
AA seq
DB search
MWKAVKDREAGFLLPSSFATRIRSHRVASLDLSNHKEIVSPHNGAINSLQVDLTEARYLL
SGSSDGSAAVYDIQHATDYERGLIAKHKSLFVVDKQHNHGHRYAISTAIWYPVDTGLFIT
GSFDHYIKVWDTNTTQVVMDFKMPGKVYRTAMSSIATTHMLIAAGSTDVQVRLCDIASGA
FTHTLSGHRDGVMSLEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSRSQLGRRPP
LAESTSKKDTTIIGLLCTTSCEGSVTGQSSSVKSMVSQRRIPLGNEMKQLRAHRKSQNLT
RGPVVQRLHPGLSSSHNRATAHYGAVTGLRATGDGMYLLSSGSDSRLRLWDVDSGCNTLV
NFEAMRLQPTKALQLAVTQDSSLVFVPCLATVKAYDVRSGMTFRTFRGHYELVNCCCLSS
QDQELYTGSNDRQILVWSPASPVIAEVEEDGKGGWDSVADQDNWSD
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggcggtcaaggacagggaagcgggcttccttctcccctcttcattcgccacc
cgtatccgttcccatcgcgtcgcttcgctcgatctctccaaccacaaagagatcgtcagt
ccccacaacggcgccatcaattctctccaggttgatttgacagaggcacgatatctgcta
tctggatcatcggatggatcagctgctgtctatgatatccaacatgctactgattatgag
agaggcttgattgcgaagcacaagagtctttttgttgttgacaagcaacacaaccatggg
catagatatgccatatctaccgctatatggtatccagtggacacagggctgtttatcaca
ggttcctttgatcattatattaaagtctgggatacaaatacaactcaggttgtcatggat
ttcaaaatgcctggaaaggtttaccgcacagcaatgtcatcaatagcgacgacacatatg
cttattgctgctggtagcacagatgtacaagttcgtttgtgtgatattgcttctggagca
ttcactcatacattatctggtcatcgtgatggagttatgtctctggaatggtctacctct
agtgagtggattttggtgactggggggtgcgatggtgcaatacgtttctgggatatcaga
cgtgccggatgtttccgtgttttagatcaatcacgatctcaacttgggaggcgacctcct
ctagctgaaagcacatcaaagaaggacaccactatcataggacttctttgcactacctca
tgtgagggttcagtaacaggacaatcttcttcagtgaagagcatggtttctcagagaagg
atacctcttggtaatgaaatgaagcaattacgagcccatcgtaaaagtcaaaatctaaca
agagggcctgtggtgcagagactgcatcctggtttatcatcgagtcataatcgtgcaact
gctcattatggtgctgtcactggactaagagcaactggagatggcatgtatcttctaagc
tcaggctccgattcacgattaagattgtgggatgtcgattctggttgcaacaccttggtc
aactttgaagctatgcgcctccagcctactaaagcactacagcttgctgtcactcaggat
tcatctcttgtgtttgttccatgcctggcaactgtcaaggcatatgatgtgcggtctggt
atgacgtttaggactttccgtggccactatgaattagtgaactgctgctgtttgagttcg
caggatcaggagttgtataccgggagcaacgatagacaaattcttgtgtggtctccagcc
agtcccgttattgctgaagtggaagaagatggcaagggtgggtgggattccgtcgctgat
caggataactggagtgactga
DBGET
integrated database retrieval system
