Elaeis guineensis (African oil palm): 105035524
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Entry
105035524 CDS
T03921
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03008
Ribosome biogenesis in eukaryotes
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105035524
09123 Folding, sorting and degradation
03018 RNA degradation
105035524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105035524
03019 Messenger RNA biogenesis [BR:
egu03019
]
105035524
03009 Ribosome biogenesis [BR:
egu03009
]
105035524
03016 Transfer RNA biogenesis [BR:
egu03016
]
105035524
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105035524
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105035524
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
Pre-60S particles
RNases
105035524
Transfer RNA biogenesis [BR:
egu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105035524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF530
Motif
Other DBs
NCBI-GeneID:
105035524
NCBI-ProteinID:
XP_010909408
UniProt:
A0A6I9QH66
LinkDB
All DBs
Position
5:79259626..79293140
Genome browser
AA seq
1106 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEAVEIDGVKIPVDTSKPNPNGMEYDNLYLDMNGIIH
PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFK
AAKDAADAAAEEDRLRQEFEKEGRKLPPKLESQLFDSNVITPGTEFMDVLSIALQYYIHL
RLNYDPGWKQIKVILSDANVPGEGEHKIMSYIRLQRNLPGHNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCQGNAKRKVGEFDEKNEDVAAAKK
PFQFLQIWTLREYLDYEFRIPNAPFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRAMGGYLTDSSKPNLGIVEHFIQAVGSYEDKIFQKRARLHQRQAERIK
REKEQAKRGDDVEPQVKPELIVPVARFQGSRLASGALPSPYDQSGSSNRSEKTKKDNQVR
QATTAMQVLNIKSNQYNTYHSKGTNFRAQKVARISSEGATVGAAIVEAENSLEIEIRENK
EELKTKLKEMLREKSDVFNSETPDEDKVKLGEPGWKERYYEEKFSAKTPEEIEAVRRDIV
IKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFQLGAPFKPFNQLMG
VFPSASSHALPLHYRRLMTDPNSPIVDFYPTDFEVDMNGKRYSWQGVVKLPFIDEGRLLA
EIEKVEHTLTEEEVRRNSIMSDMLFVNVSHPLSPYIFSLSSNSGQLSEKERAEVKEKLDP
GASGGMNGYLSLCDGDPCPPVFRSPVKGMEDIMDNQVICSVYKLPDAHKHITKPPQGVIF
PKKTVTAGDLKPPPVLWHEDTGRKPFENGRQNPPGTISGRQLGAAAHRLVMNSLQISADR
NGGEASYAPPSYEMAANGGLYSNGRDHFIDRRTAVGVDHQVSNAQWYGPGNHLGNSHGQW
YASSMPNHHQYERSVSHHYERDQQVRSHYTANGRHSQPDVRGRVPVQSYPQNGGYPYHSV
NRSAAPPPIPGPYGHPGAVYHGGYGGYPNYGAEQWEQRRDPRRGLLSSQPAVGRGYTHNQ
QSTNRFAALDRGSNRRPPPPPGYGRY
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccggcgttctaccggtggctggcggagaagtacccgatggtggtggtggac
gtggtggaggaggaggcggtggagatcgatggcgtcaagattcccgtcgatacctccaag
cccaaccctaatggcatggaatacgataacctctaccttgatatgaatggtatcatccat
ccctgcttccaccctgaggatcgacctgctccaactacctttgatgaggtattccagtgt
atgtttgattacattgacagactttttgttatggttcgccctcggaaacttctatacatg
gcaattgatggtgttgcaccgagagctaagatgaaccagcagcgctccaggcgatttaag
gcagcaaaagatgcagcagatgcggcagctgaagaagatcggttacgtcaagagtttgag
aaggaaggcagaaagcttcctccaaaactggaatcacaactttttgattccaatgttatc
actcctgggactgaatttatggatgttttatcgattgcactacagtattatattcatttg
agactaaattatgaccctggatggaaacagatcaaagttatcctttctgatgcaaatgtt
cctggcgaaggggaacacaaaattatgtcatatattcgcctgcaacgaaatctacctggt
cacaatccaaatactcggcactgtttatatggtttggatgcagatctgattatgttagct
ttggcaacgcatgaagtgcatttttcaatcttgagagaggtcgtgttcactcctggacag
caagacaagtgcttcttgtgtggtcaaatgggccatttggctgcagattgccagggaaat
gcaaaaagaaaagttggagaatttgatgagaagaatgaagatgtggctgctgcaaaaaag
cctttccagtttcttcaaatctggactcttcgggagtatttagactatgaattcagaatt
cctaatgctccttttgagattgactttgagcgcatagttgatgattttatcttcatgtgc
ttctttgtgggcaatgactttctgccacacatgccaactttagaaattcgtgagggtgca
ataaatttattaatggctgtctataagaaagagtttagggcaatgggtggctatttgaca
gactcaagcaagccaaatttgggcatagtagagcattttattcaggcagttggatcatat
gaggataagatatttcagaaaagagctcggttgcatcagcgccaagctgaaagaataaaa
cgtgaaaaggaacaagctaaacgaggagatgatgtagagccacaagtcaaacctgagctt
atagtgcctgttgctcgttttcaaggttcacgtcttgcatctggtgctttgccttcacca
tatgaccagagtggatcttcaaacaggtcagaaaagacaaaaaaggataaccaagttaga
caagctactactgccatgcaagtgcttaatattaagtctaatcagtataatacgtatcat
agtaagggaacaaattttcgagcccaaaaggtagcacgcatttcatctgaaggagcaact
gttggtgctgctattgtggaggctgagaatagtcttgaaatagaaatacgggaaaataag
gaggagttgaaaacaaaacttaaggaaatgcttcgtgagaaatcggatgtttttaactct
gaaactccagatgaggacaaggtaaaactgggagagccaggatggaaagaaagatattat
gaagaaaaattttctgcaaaaactcctgaagaaattgaagcagtgcgaagagatattgtc
ataaagtacacagaaggcttgtgttgggttatgcactattactatgaaggggtttgctca
tggcaatggttttatccttaccattatgcaccttttgcatctgacctgaaggatttaggt
caattgaatataagctttcaacttggtgcaccttttaaacctttcaatcagctaatgggg
gtgtttccatctgcaagttcccatgctcttcctttgcactataggcgattgatgactgat
ccaaactctcccatagttgatttctatccaactgattttgaggtagatatgaatgggaag
agatattcttggcagggtgttgtaaaactgccttttattgatgagggtcggttacttgct
gagattgaaaaagtggagcatactttaacggaggaggaagtgcgtcgaaacagtatcatg
tctgacatgctttttgtaaatgtttctcaccctctctctccatatatattttctcttagt
agcaattctggacaactgtcagagaaagagcgtgctgaagtgaaagaaaaacttgaccct
ggagccagcggtggaatgaatggatatttgtccctttgtgatggagatccatgccctcct
gtcttcaggtctcctgttaaaggaatggaagatataatggataatcaagtcatatgttct
gtatacaaacttccggatgcacataaacatatcactaaaccaccacaaggtgtcattttc
ccaaagaagactgttacggctggtgatttgaagccaccacctgtcctatggcacgaagat
actggcaggaagccatttgaaaatggaaggcaaaatcctccagggactatttcaggccga
caacttggagcagcagctcatcggctcgtcatgaacagtttacagattagtgcagaccgt
aatggtggtgaagcaagttatgctccaccatcatatgagatggcggcaaatggtggacta
tattcaaatggcagagaccattttatagaccggcgaacagctgttggggtagaccatcaa
gttagtaatgcacagtggtatggtcctggtaaccatttaggtaacagtcatgggcagtgg
tatgcttcttcgatgccgaatcatcatcaatatgaaagatctgtatcacatcactatgaa
agagatcaacaggttaggtcgcattataccgcaaatggaagacacagccaacctgatgtg
agaggaagagttcctgtgcaaagctatcctcaaaatggaggttacccttatcattcagta
aatagatctgcagcaccaccaccaattccaggaccctatggtcatccaggggctgtatat
catggtggctatgggggctatccaaattatggagcagagcagtgggagcaacggcgtgat
cccaggagggggctcctgtcatctcaacctgcagttggaagaggttatacgcataaccaa
caaagtactaatcgttttgcagctttagatagaggctcaaaccgaaggcctccaccacca
ccagggtatggccgatattag
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integrated database retrieval system
