Elaeis guineensis (African oil palm): 105035693
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Entry
105035693 CDS
T03921
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105035693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105035693
03019 Messenger RNA biogenesis [BR:
egu03019
]
105035693
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105035693
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105035693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105035693
NCBI-ProteinID:
XP_010909642
UniProt:
A0A6I9QI13
LinkDB
All DBs
Position
5:63722854..63740038
Genome browser
AA seq
1053 aa
AA seq
DB search
MPKIPVQERQASERGRPIRASMEEERLHSSRESPRFPPGDRPPRLAASAEPQPLPASRPP
PSILDRFRAMLREREEELRKATGDDPPPPPTAGEIVRFYKELLSELTFNSKPVITELSII
AGQHSQFAEGIADAICARVLEVPVDQKLPCLYLLDSIVKNIGREYVKYFAACLPKVFCEA
YNQVPPTQYSAMRHLFGTWFQVFPLSVLHKIEDELQFSPTENKQSSGITSTRHSESPSSR
PSHGIHVNPKYLEARQQLKHSTSDTEHVRGVSSSGQKSSMQCNEYSIDHPEVLPPRPGAA
RTGSPQTAATCTTSMVEVEGPTRQLKIKISRSSPPPIIGPRNSISPPIDRFSRDTSPRRM
LERVSPSHSGFVYGPGRGTNQNGWLERRWPFDDSAQKIQASMAFNLNNGYAKQRSRELID
AYGNYTGKSASLEKLPKVQRVDVNSVASERAARKWKNSEEEEYVWEDMSPTLSDRSRRNS
LPPFGPSLPPLSTRAGLTRPDASLLDHDSGRRSWPGQAQLPAVGDSAFTIEDRIPVFGSA
HGSMNRKYLDSTVSQNDWLPHYQGSQHMHQPRKLPFMFPKSAQHSLSPQSRGRAHQMPVA
ASGITPLVINKLPSPYEHTTDLEVPFQRLSSSHSDPFDVDTSTLERHLTQRPHSPPPAPI
IWPPVHNTQQLPLLPIPPNQKQFKSSFDHVEANKPILNQRPESFFNLSQYQNDTADRKIS
NSNKLLQLPYQQPGLAHANQQSQEQGASMQIQSQKSNGSILSPAPAQLSSQIVAQPLNHV
QTSGQGIAMGSVLHNQLSGLPSSVAVNSVPDTSLRVNASVLPPLPPGPPPASSQMGPVLQ
NTGSMISSSPAGAFSGLISTLMAQGLISLTPPDQSQDSVGVEFNAELLKVRHESAINALY
TDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRVSKNRKQKPSRKWFVSAKEWLSGAETLG
NDVVPGFLPTETVTDKREDKEMAVPADENQNVCALCGEPFEDFYSDETEEWMYRGTVYLY
ARDGYTEGLDRSQLGPIVHAKCRSESKEGSGQA
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaatcccagttcaagaaaggcaggcgagcgagcgagggagaccgattcgggct
tcgatggaggaggagaggctccactcctcgcgggaaagccctagatttcctccgggggac
cgccccccacggctggcggcgtcagcggagccacagcccctgccggcctcgcggccgccc
ccgtcaatcctcgaccggttccgcgccatgctccgggagagggaggaggagctgcggaag
gccaccggagacgacccacccccgccccctaccgcgggcgagatcgttcgcttctacaag
gagctcctctcggagctcaccttcaactcgaagccagtcatcaccgagctctccatcatc
gccgggcagcattcccagttcgcggaggggatcgccgacgccatctgtgcgcgggttctc
gaggtccctgtagatcaaaaattgccttgcttgtatcttctggatagtattgtgaagaac
attggtcgtgaatatgtgaagtattttgcagcatgtctccccaaggtgttttgtgaggca
tataatcaagtccctcctacccagtattctgccatgcgccacctttttgggacttggttc
caggtcttccctttatcagtacttcacaagattgaggatgaactccaattttctcctacc
gagaacaaacaatcatcaggaatcacaagtacaaggcactctgaatctccatcttctcgt
ccatctcatggcattcatgtaaatcctaagtacttagaagcacgacagcagttgaaacat
tcaacttcggacactgaacacgtcagaggagtttcttccagtgggcagaaatcttccatg
caatgcaatgagtacagtattgatcatcctgaggtgcttcctccacgaccaggggcagca
agaacaggttcaccacaaactgcagccacatgcacaacctccatggttgaagtggaaggt
ccaactcgtcaattaaagatcaagatctcaaggtcttcaccacctccaataattggacca
cgaaattctatatcaccacccattgacagattctccagagatacttctcccaggaggatg
cttgaaagggtttctccatctcattcaggatttgtatatggacccggcagagggactaat
cagaatggttggcttgagaggagatggcctttcgatgacagtgcccagaaaatacaagct
tccatggcattcaaccttaataatggatatgccaagcagcgctcgagagaacttattgat
gcatatggaaattatacagggaaaagtgcttctcttgaaaagcttccaaaggtacagcgg
gttgatgtaaatagcgtagccagtgagagagctgctagaaaatggaagaattctgaggaa
gaagagtatgtttgggaggatatgagcccaactttatctgatcgaagcagaagaaacagc
ctgccaccctttgggcccagcctgccacccttgagcacaagggctggtttaactagacca
gatgcttcacttctggatcatgattctggaaggcgcagttggcctggccaagctcagctg
cctgcagttggtgattctgcttttaccattgaagataggataccagtatttggttctgct
catggatcaatgaataggaagtatctggatagcacagtaagtcagaatgattggttgcca
cactatcagggttctcagcacatgcatcaacctcggaagttgcctttcatgtttccaaag
tctgcacaacatagccttagtccacaatcgcgaggaagggctcatcagatgcctgttgca
gcaagtggaataacacctctggtcattaataaattgcccagtccgtatgaacatacaaca
gatttggaagtgccatttcagaggttatcaagctctcattctgacccttttgatgtggac
acatccacattagagaggcatttgacacaaagaccacattcgccccctcctgctccgatt
atatggcctcctgttcataatacccagcagctgcctctactacctattcctccaaatcaa
aagcagtttaaaagttcttttgatcatgtggaagctaacaagcctatattaaaccaaagg
ccagaatcatttttcaatttgtctcagtatcagaatgacactgctgataggaaaatatca
aactcaaataagttactccaattaccatatcaacagcctggcttagctcatgcaaatcaa
cagagtcaggaacaaggcgctagtatgcaaattcagtctcagaagtctaatggaagcatt
ctttcacctgcaccagctcagctttcatctcaaatagttgctcagcccttaaatcatgtg
caaacgtcgggacagggcattgccatgggttcagttttacataaccagttatctgggcta
ccttcttctgtggcagtaaacagtgtgcctgatacctctttacgtgtaaatgcaagtgtt
ttacctcccttgcctccaggaccacctcctgcctcatcacagatgggacctgtgttgcaa
aatactggttctatgatatctagctcgcctgcaggtgcattttcaggtctgattagtact
cttatggcacagggtttgatttcattgacaccaccagatcaatctcaggattctgtgggg
gttgaatttaatgctgaacttcttaaggtgcgacatgaatctgcaattaatgctttgtat
actgatcttccaaggcaatgcacaacatgtggcttgcgtttcaaatgccaagaagagcac
agtagtcacatggattggcatgtgactaaaaaccgagtgtctaagaatcgtaagcaaaag
ccatctcgcaaatggtttgtaagtgcaaaggaatggcttagtggggcagaaacacttgga
aatgatgttgttcctggctttttgcctactgaaactgttacagataagagggaagataag
gaaatggcagtcccagcagatgaaaatcagaatgtgtgtgcattatgcggggagcctttt
gaggatttttatagtgatgagactgaggagtggatgtacagagggacagtatatttgtat
gctcgagatggatatactgaaggtttagacaggtctcaattgggccccattgtccatgcc
aagtgcagatcagagtctaaggaaggatctggacaagcttaa
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integrated database retrieval system
