Elaeis guineensis (African oil palm): 105036143
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Entry
105036143 CDS
T03921
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105036143
03015 mRNA surveillance pathway
105036143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105036143
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105036143
mRNA cycle factors
P-body specific factors
105036143
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
105036143
NCBI-ProteinID:
XP_010910195
UniProt:
A0A6I9QIK8
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Position
1:complement(2437998..2456275)
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AA seq
566 aa
AA seq
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MKDPLDRTKVVLRRLPPAIPQATLMEEIDGRFAGRYKWFCFRPGKNNRKNQHHSRAYIDF
NRSEDVVEFAEFFDGHIFVNEKGGQFKVHVEYAPSQHVPKRRSKKDVREGTIIKDPEYLE
FLEHLAKPAENLPSAEIQLERREAQRAGGQKDMVIVTPLMEFVRQKRVAKSGSQRSVNGK
LGRRSRGASSSGSNPSSRRSSEKRRVSKPMYVLRDSRRNISGKDKPTYILVSRKDDQQLL
DKSIAVASASSIEALEEAKGVETGKKRILTLKAKVTEDYHVSDGSSRNVSSVKKSSSYTF
KQNQGHETSGRIVRSILSNKDSCQSYVTASQSEQQTPTGNLDKDKHPPTPPNMCSMLKVH
IASKPPLASIYDSEGKNSLDDKVPGNNLNCLVSTSEKHNGCTRNKDRPDRVVWAPFRCSD
GLHADDETLSSCSVPAQRSSCSSESISLSQQAAGIKAGDDDVACMGRLNNPSAGYDISTS
LGEIKAHMSNANRTAEVKTFGGGRVSPFSAKNGSHRYIGHRGPVHGMKEVDASLNYREGK
PSKRGGPAGYGSHERQVWVQKSGSGT
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatccgttggataggacgaaggtcgtgctccggcgcttgccgccggcgatccct
caggcgacactgatggaggagatcgacggcaggttcgctggccggtacaagtggttctgc
tttcgcccggggaagaacaaccgaaagaatcagcatcattctcgagcctatatcgatttc
aacaggtcggaagatgtggttgaatttgctgaattctttgatggacacatatttgtcaat
gaaaagggtggtcagtttaaagttcatgttgaatatgcaccatcacagcatgttccaaag
agaaggtctaagaaggatgtccgtgaagggactataatcaaggatcctgaatatctggag
ttccttgagcatcttgcaaagcctgctgagaatcttcctagtgctgaaattcagctggag
aggagagaggcacaaagagctggtggacagaaggatatggtcatagtgacacctctgatg
gaatttgtgcggcaaaaaagagttgctaagagtgggtctcagaggtctgttaacgggaaa
cttggtagaagatctagaggagcttcttctagtggctctaatccttcttccagacgaagc
tctgagaagcgacgggtctctaaaccaatgtatgttttaagggacagtagaaggaatatc
agtggaaaggacaaaccaacatatatattagtatctagaaaagatgatcagcagctgcta
gataaatctattgctgtagcttcagcaagttcaatagaagcattagaagaagcaaagggt
gttgaaactggaaagaaaagaatcttgactttgaaagcaaaagtgacagaagactatcat
gtatctgatggttcatcacggaatgtgagttcggtgaaaaaatccagttcatatactttt
aaacagaatcagggacatgagactagtggaagaattgtaaggagcattctatctaacaag
gatagctgtcagtcttatgtgactgcatcccagtcagagcagcagactccaacagggaac
ttggataaagacaagcatccacctactcctcccaatatgtgctcaatgctgaaggttcac
attgctagcaagccgccacttgcttccatttatgatagcgaaggcaaaaattccctagat
gataaggttcctggtaataatctcaattgtcttgtatccactagtgaaaaacataatggg
tgcacaagaaacaaagacagacctgatcgtgttgtctgggctccttttcgttgttcagat
ggattgcatgctgatgatgaaaccctttcttcctgttctgtacctgcacagaggtcctca
tgttcatcggaaagcatctctctttctcaacaggcggctggaataaaagctggagatgat
gatgtggcctgtatgggacgtctcaataatccatctgctggctatgacatatcaacaagt
cttggagaaatcaaagcgcacatgtctaatgcaaaccgaactgcagaagttaaaactttt
ggaggtggacgtgtcagtcctttttctgcaaagaatggttcccatagatatattgggcac
cgtggacctgtgcatggtatgaaggaagttgatgcttctctgaattatcgtgagggaaag
ccttctaaaagaggaggtcctgctgggtatggttcccatgagagacaagtgtgggtgcag
aagtcaggttctggtacataa
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