Elaeis guineensis (African oil palm): 105036286
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Entry
105036286 CDS
T03921
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105036286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105036286
03019 Messenger RNA biogenesis [BR:
egu03019
]
105036286
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105036286
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105036286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
105036286
NCBI-ProteinID:
XP_010910352
UniProt:
A0A6I9QJ82
LinkDB
All DBs
Position
8:75111059..75126550
Genome browser
AA seq
1118 aa
AA seq
DB search
MQMESSRRSATDRSREPGLKRPRLVEDDRGFSTSRDRPFPPPKAGSQPLAPRLRAGSERE
MVEREDAPRGESYQQQQELVAQYKTALAELTFNSKPIITNLTIIAGENRHAAKEIAATIC
ANVLEVPSEQKLPSLYLLDSIVKNIGREYIKYFAARLPEVFCRAYKHVDSSVHPSMRHLF
GTWKGVFPSAMLHIIENELGFSAVVNGSSGSASSRPDSQTQRPPYSIHVNPKYLEARQRL
QQSTSAKEIINDDISGAVNSIDAERSDKAAIIGSTRQWNNVPNRMPNMWPQRELINNPIH
ERKEFRGHEFSSDITRQSDLGVGRVSERLKERDVLDKPYHGARINASEMRISRSNGFDAN
HAYGVYRASGSARVDGQLPSVHLNNIDRSIQLTSKNWKNSEEEEYMWDDMNSGAIDSEST
DNLIKGGWSTNDANKPACLQKVKWMPPEPEHLGSYLNKIDSLSQLRKTSGQEGRVPPLKE
PEELPQPHTKHDAESRVGVGTSADALYMGRDALEHPTSIWASHEVSPSMIGVNHTSSRIS
SQSEGQPISFSGGLSMSMGSSLVSGSSGMLGQQRQQLLQPPSSSAHSPPSSAVLQHQKSQ
SSMDHDLLRSNSFFPMGQKPTRVPDQLSQVLQASVTQDSFPISGQNHTQHSNTSLNSQLP
SSHPSQHLQSLSASASAPFGQLRHHLPFLQQSGSSLSVQETQTQSQTSHQTKKSPPLPQS
FGSHQIELSGTNNSNNPAVELSGQPSTTNLLAAIMNSGLVPNNTMSNFQNPNIQPPLPSG
PPPSLVATSSVPSVASSSISLPLSHGNISTLVPPSTGLILPPLPPGPPPPSSLVRTTKET
SNIASLTTNPLSCLLSSLVEKGLISSPATDLPAATSVQLPNELANQSSGFANSISKCELS
TVGSSIIPSVAAKGPSATESDAPTSSALVQSTTRLNDLLGIEFTPEIIRKFHPDVISSLF
DDLEHRCNICGLRFRLKEQFHGHFDWHGSKKSELSCFNRVSRKWYVNLSSWLSGCVGPQA
GPVESTISLDEIVPMDEQYEPAVPADESQCICALCGEPFEDVYSTERDEWMYKGTVYLNL
PNEQSDMEKMDESAGQVPIVHASCISRSSADSMEAAKD
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgcagatggagagctcccgcagatccgccacggaccgctcccgagagccgggcttgaag
agacctcgattagtggaggatgaccgcggcttctccaccagccgagaccgtccgttccca
ccgccgaaggccggcagccagccgctggccccgaggctgagggcgggcagcgagagggag
atggtggaaagggaggacgcgccgaggggagaatcttatcagcagcagcaagagctcgtg
gcgcagtacaagaccgcgctggccgaactgacgttcaattcaaagcctatcatcacgaat
ctaaccatcatcgcaggagagaatcgccatgctgctaaggaaatcgcggccactatctgt
gccaatgttctcgaggttcccagtgaacagaagttgccatccctttatctccttgatagt
attgtgaagaatattggaagagagtacattaaatattttgctgcaagattacctgaggta
ttttgcagggcctataaacatgttgattcttctgtacatcctagtatgcgacatcttttt
ggaacatggaaaggagtctttccctctgctatgcttcatataattgagaatgaacttggc
ttctcagctgtcgtgaatggttcatctggatctgcatcatcgaggcctgattctcagaca
cagcgtccgccctacagcattcatgtgaatccaaaatatttagaagcaagacagcgtctt
caacagtcaactagcgcaaaggaaataatcaatgatgacatcagtggtgcggttaattcc
attgatgcagagaggtctgacaaagcagcaattattggaagcacaaggcaatggaataat
gtgcctaacagaatgcctaatatgtggcctcaaagggaactgataaacaaccccattcat
gagagaaaagaattcagaggtcatgagttttcttctgatattacgcggcagtcggatctt
ggagttggaagggtaagtgagaggcttaaagagcgagatgtacttgacaaaccatatcat
ggtgctcgcataaatgcttctgaaatgcgcatcagcagaagcaatggctttgatgctaat
catgcttatggagtataccgagcatctggatctgcacgtgtagatggtcagctgccttca
gttcacctgaacaatattgatagaagtatccaactaacatctaagaactggaagaattcc
gaggaggaagagtatatgtgggatgacatgaattccggagcaattgattctgaaagtact
gataacctaataaaaggcgggtggagtactaatgatgcaaataaacctgcatgtttgcag
aaagtcaagtggatgcctccagagcccgagcatctgggctcttatttgaacaaaattgac
tctttatctcaattgaggaagacctctggacaggaaggcagagttccaccacttaaggaa
cctgaagagcttccacagccccataccaagcatgatgctgagtcaagagtaggtgtggga
acttcagcagatgcactatacatggggcgagatgctttggagcatcctacctccatttgg
gcctcacatgaggtttcaccctcaatgattggagtgaatcatacaagctcaagaatttct
agtcagtccgaaggacagcctatttcttttagtggtggtttatctatgagcatgggttca
tctttagtttcaggatcaagtggaatgcttgggcagcaaagacagcaactgttgcagcct
ccatcatcatctgcacattcacctccatcttctgcagtccttcaacatcagaaatcacaa
agttcaatggatcatgatcttcttcgatctaattccttctttcccatgggtcaaaaacct
acacgtgttccagatcagttgagtcaagtcctacaggcatcagtaactcaggattctttt
cctatttcaggccaaaatcatactcagcattctaatacttcactgaactcacagctaccc
tcatcacatccttctcaacacctgcaaagcttgtctgcttctgcttcagcaccttttggt
cagcttaggcatcaccttcccttcttgcagcaatcagggtctagtctatcagtgcaagag
acacaaacacagtctcaaacttcccatcagaccaagaaatcaccacctctaccccagagt
tttggatctcatcagatagaactttctggaacaaacaattcaaataatcctgctgttgaa
ctcagtggccaacctagcacaactaatttattggctgctattatgaacagtggacttgta
ccaaacaatacgatgagtaatttccagaacccgaacatacagcctcccctacctagcgga
cctcctcctagtctagttgcaacatcatctgttccttctgtcgcttcctcttcaatatca
ctaccattgtcccatggcaatatatcaactcttgtgccaccctctacgggactcattctt
cctcccctaccacctgggcctccacctccctcatccttggtgcgtaccaccaaagagacc
tccaacatagctagtctcactacgaatccactttcatgtcttctgagctcattagttgaa
aagggtttgatatcctcaccagcaacagatttaccagctgcaacttcagttcagctgccc
aatgaactggcaaatcagagtagtggctttgctaacagcatctcaaagtgtgaactttca
accgtaggtagttcaatcattccttcagtagcagcaaaagggccttctgccactgaatca
gatgctccaacaagttctgcattggtacaatccactacaagattgaacgaccttttaggc
attgagttcacgccagagatcatacgcaaatttcatcctgatgtgatcagtagcctcttt
gatgacctagagcatcggtgcaacatatgtggcctaagattcagacttaaagagcaattc
catggtcacttcgattggcatggctcaaagaagtctgaactgagctgtttcaacagagtt
tctcgaaagtggtatgtgaatttgagtagttggctctctggatgtgtgggaccacaagct
gggccagtggagtcaacaatttctctggatgagattgtcccaatggatgagcaatacgag
ccagcagttcctgcagatgaaagccaatgcatatgtgcattatgcggagaaccatttgaa
gatgtttattctactgaaagggatgaatggatgtacaaaggaacagtgtatttgaatcta
ccaaatgagcaaagtgacatggaaaaaatggatgagtctgctggacaggttcctattgtg
catgccagctgtatatcaagaagctcagctgatagcatggaggctgcaaaagactag
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integrated database retrieval system
