Elaeis guineensis (African oil palm): 105038077
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Entry
105038077 CDS
T03921
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105038077
09122 Translation
03013 Nucleocytoplasmic transport
105038077
03015 mRNA surveillance pathway
105038077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105038077
03041 Spliceosome [BR:
egu03041
]
105038077
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105038077
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105038077
Spliceosome [BR:
egu03041
]
Complex C
Other components
EJC/TREX
105038077
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105038077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105038077
NCBI-ProteinID:
XP_010912069
UniProt:
A0A6I9QPW5
LinkDB
All DBs
Position
2:complement(122238966..122247807)
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AA seq
428 aa
AA seq
DB search
MGEARENDAYEEELLDYEEDEEKASDAVAAKGANETAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVSGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIAKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagcaagggaaaacgatgcttacgaggaggagcttcttgactacgaagaggac
gaggagaaggcctctgacgccgttgcggccaagggtgctaacgagacggcgaagaaggga
tatgttggaattcatagttctggattcagagacttcctgttgaagccagagcttctccgg
gcaatcgtagattcagggtttgagcatccttctgaagtacaacatgagtgcatccctcaa
gctattttgggaatggatgttatctgtcaagcaaagtctgggatggggaagactgctgtt
tttgttctctcaacacttcagcaaatcgagcctgtttcaggccaggttgctgcacttgtt
ttgtgccatacgagagagttagcttaccagatttgccacgagtttgagaggttcagcacg
tacttgcccgatattaaagttgctgtgttctatggaggagttcacattgcaaaacacaag
gatatactgaagaatgagtgtcctcacatcgtagttgggacaccaggaagaatactggca
cttgctcgggataaggatctttctttgaagaatgtgaggcatttcattcttgatgaatgc
gacaagatgcttgagtcacttgacatgcggagagatgtgcaggagattttcaaaatgaca
cctcatgataagcaagtcatgatgttttcagcgactctcagcaaggagatccgtcctgtt
tgcaagagatttatgcaagatccaatggaaatatatgtggacgatgaggccaaacttacc
ctgcatggtttagtacagcactacatcaaactgagcgagttggaaaagaaccgaaagttg
aatgatcttttggatgcgctggacttcaatcaggttgtgatctttgtcaaaagtgtcaac
agagccgcagagctgaacaagttgctggtggaatgcaactttccatcaatctgcatccac
tctggaatgtcgcaggaagagagattgatgaggtacaagggcttcaaagaagggcacaag
agaattctcgttgctactgatttggttggcagagggattgacattgagcgtgtgaacatt
gtaatcaattatgacatgccagattctgctgacacatacttgcacagggttggcagagct
ggtcgatttggaaccaagggacttgctattacatttgtctcatctgcctctgactcagat
gttcttaatcaggttcaagagaggtttgaggtggacataaaggagctgccagagcaaatt
gatacctccacatacatgccatcgtga
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