Elaeis guineensis (African oil palm): 105038171
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Entry
105038171 CDS
T03921
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105038171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105038171
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105038171
mRNA degradation factors
5'-3' decay
Decapping complex
105038171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EML_2
DUF445
Motif
Other DBs
NCBI-GeneID:
105038171
NCBI-ProteinID:
XP_019704020
UniProt:
A0A6J0PGL3
LinkDB
All DBs
Position
1:102720031..102736304
Genome browser
AA seq
1414 aa
AA seq
DB search
MASPAGSPNPSGPFELHKLFKPPNPSPNPNPSAPPTVPPPSSYGAVPPPAYPSPSPGAFS
YPPTTPPFHHHPFLHYPHDPLHRPTVSYPAAPPHLPSANPNPNLNPNPSPGPNHGARLMA
LLGNTATSHLESTVSMPSPSSIPSEFSAPANPPILHAIPSAPPATLAPIGQPAPARLPSS
KMPRGRHLAGGDRAVYDVDSRLPGESQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYICY
GLKLGAIRVLNINTALRSLLRGHTQRVTDMAFFAEDVHFLASASVDGRVFAWKIDEGPDE
ENKPQITGKIIVAIQIVGDGESYHPRICWHSHKQELLFVGIGNRVLKIDITKVGRGKEFS
AEEPLRCPIEKLIDGVHFVGKHDGEVTDLSISQWMTTRLASASKDGTVKIWEDRKAVPLT
TLRPHDGQAVNSVAFLTSPHRPDHINLITAGSLNREVKIWASAGEEGWLLPNDSEAWQCT
QTLDLRSSSEPRLEEAFFNQVVVLPRASLIILANAKKNAIYAVHVDYGPYPAATCMDYVA
DFTVAMPILSLTGTNDCLPDGEQVVQVYCVQTQAIQQYALDLSQCLPPPNDNVALGKDPC
ISRVSDTPSSEGVPVAEPSRGPMVSDLPVGRSASPKPPLMDSGTDNQPITSYPVTSVASE
VNGIQELSPSNVEVKPSAPPLPSSDADAANILSSPLPLNLDPAGKLPALKGPPKGFEQVP
SPGGRDVDPSNVDYSVDRRVDTVITSTADVLSMSDNLGKDGSKAGQNDISMVPNPRLMFK
LGGNTTHLVTPSEILSGAISSSETSHVNQGPKGDEAKVPDATVNNKLENVEVELKVAGES
RSSQNEDFDSQKEAKVVTAERKEKSSQISESSIEMANACLAETETCSVEESRAVDGIAVA
ESLEQPPSTGEEEIQDSTKDMPEKVAESVGTAVTAAKGKKSKGKQSQASGLSSPYSSPFN
STDSSNEPGSSVVAPSTETVFPQILAMQDMLNQLMTMQKEMQKQMSVTLAVPVTKEGKRV
ETALGRSMEKAIKANVDALWARFQEENAKHEKLERDRMQQITSLITNCMSKDWPAMLERA
LKKEISAVGPVIARTITPVIEKTISSAITDAFQRGVGDKAVNQLEKTVNSKLEATVARQI
QVQFQTSGKQALQDGLRSSLESSMIPAFEQSCKAMFEQVDAAFQKGMTEHTAASQQQFEA
SHSPLALTLRDAINSASTITQNLTTELIDGQRKLLALLAAGNTKALNPIAMQQNNGPMAA
HPEMVLSVQQVEAPLDPTKELTRLISERKYEEAFTMALQRSNVSIVSWLCSQVDLHAICS
TVPLPLNQGVLLALLQQLACDISNETSRKVGWMTEVAVAINPTDPMITMHVRPIFEQVYN
ILAHQRSLPTTTASEAANVRLIMHVINSVLMSCK
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccccgccggaagccccaacccttccggccccttcgagctccacaagctcttc
aagcccccaaaccccagccctaaccctaaccctagcgcccctcccaccgtccctccgccc
tcctcctacggcgccgttccaccgcccgcgtacccctcgccgtcccctggcgccttctcg
tacccccccaccaccccgcccttccatcatcaccctttcctccactatccccacgacccc
ctccaccgccccaccgtctcctaccccgccgcccctcctcacctccccagcgccaatccg
aaccctaatcttaaccctaaccctagccccggccccaaccacggcgctcgcctgatggcg
cttctgggcaacaccgctacctcccacctcgaatccacggtctcgatgccttccccatcc
tccataccgtctgagttctccgccccagcgaaccccccgatactccatgccatcccctcc
gcgcctccggcgacgctggcacccatcggccaaccggcgccggcgaggttgccgagcagc
aaaatgccgcggggaaggcacctggcgggcggggaccgggcggtgtacgacgtggactct
cggctgccgggggagtcccagccgccgcagctcgaggtcactccgatcaccaagtacacg
tcggatccggggcttgttttgggtcgccagatcgcggtcaaccggacgtacatctgctat
gggctcaagctcggtgcgatccgcgtcctcaacatcaacacagcactgagatcgctgctc
cgggggcatactcagagggttacagacatggctttctttgctgaagatgtccactttctg
gcaagtgcaagtgtggacggaagggtttttgcatggaagattgacgaggggcctgatgag
gaaaataagccacagattacaggaaaaatcatagttgccattcagattgtaggagatgga
gaatcctatcatccacgaatctgttggcattctcacaaacaagaacttttatttgttgga
attggaaaccgtgttctaaaaattgacataacaaaagtgggaagaggaaaagaattttct
gcagaggaacctctaagatgcccaattgagaagctgatcgatggcgtgcattttgtgggc
aagcatgatggtgaagtgacagatttgtcaatatctcaatggatgacaactcgtttggct
tcagcatcaaaagatggcacggttaagatctgggaagatcgtaaagcagttccccttaca
actttgaggccgcatgatggtcaagctgtcaattcagttgcattcttgacatcgcctcat
agacccgatcacattaatctcatcacagcgggttctttgaatagagaagtgaaaatatgg
gcctctgctggggaagaaggttggcttttgcctaatgattctgaagcatggcagtgcact
cagactttggacttgagaagttcttcagaacctcggcttgaggaggcattttttaaccaa
gttgtggttttgcctcgagcaagccttataatacttgcaaatgctaaaaagaatgctata
tatgcagttcatgtagactatggtccatatccagcagctacatgcatggactatgtagca
gattttactgtggcaatgcctattttgagccttaccggaacaaatgactgccttcctgat
ggggaacaggtggttcaggtttactgtgttcagacacaggctattcagcagtatgcattg
gatttatcacagtgtttgccaccaccaaatgataatgttgcattggggaaggatccttgt
atatcacgtgtttctgacacacctagttcggaaggggtaccagttgcagaaccatcccgt
ggacctatggttagtgatcttcctgtaggaagaagtgcttcacccaaacccccattaatg
gatagcggcactgacaatcaacctataacttcatatcctgtaacttcagtagcttcagag
gttaatggtattcaggaactgtctccatcgaatgttgaagttaagcccagtgctcctcca
cttccaagttcagatgctgatgctgcaaacattttatcttcccctcttcctttgaattta
gaccctgcaggaaagctacctgccttgaaaggccctccaaaaggttttgagcaggtacca
tcacctggtggccgtgatgttgacccatcaaatgttgattattcggttgataggagagtg
gacactgttatcacaagtactgctgatgttctttccatgagtgataacttgggaaaggat
ggatctaaagctggtcaaaatgatatttctatggtgcctaatcctcgtcttatgtttaag
ctgggtggcaacacaacacatctagtaactccatcggaaatcttatcaggtgcaatatcc
tcatctgagaccagtcatgttaatcaaggtcctaaaggtgacgaagcgaaggttccagat
gcaactgttaataataaactggagaatgtagaagtggaactaaaagttgcaggtgagagt
agatcaagtcagaatgaggattttgactcccaaaaagaggctaaagttgttactgcagag
agaaaggagaaatcctcccagatttcagaatcaagcattgagatggccaatgcatgtttg
gcagaaactgaaacttgcagtgtggaagaatctcgtgctgttgatggcatagctgttgct
gagtcattggaacaacctccaagtactggcgaggaagaaattcaagacagcacaaaggat
atgcccgaaaaggtggcagaatctgttggtactgcagtaactgctgccaaagggaagaag
tcaaagggaaagcagtctcaagcgtctggtttatcatccccatattcaagtccttttaac
tctactgattcttcaaatgaaccggggagcagtgtagttgctccttccactgaaactgtg
tttcctcaaattctggcaatgcaggatatgctgaaccagcttatgaccatgcaaaaggaa
atgcagaagcagatgagtgtaacgctggctgttcctgtcaccaaagaaggcaaaagagtg
gagacagccttaggccggagtatggagaaagccatcaaggccaatgttgatgctttgtgg
gcccgtttccaggaagaaaatgcgaagcatgagaagctagagagagatcgaatgcagcag
atcacaagtctgatcacaaactgtatgagcaaggattggcctgccatgttggaaagagca
ttgaagaaggaaatctctgcagttggaccagtcatagctcgtacaattacaccagttatt
gaaaaaacaatttcttcagcaataactgatgcatttcagagaggtgttggagacaaagca
gtaaatcagttggagaagactgtcaattcaaaacttgaagctacggtggctaggcaaatc
caagtgcagttccaaacttctgggaagcaagctcttcaggatggcttgaggtcttctctg
gaatcttcaatgattcctgcatttgagcagtcttgcaaagcaatgtttgaacaagtggac
gctgcattccagaagggaatgactgaacatactgctgcatctcagcagcaatttgaggca
tcacacagtcctctggctctcactttgagggatgcaatcaattctgcatccacaatcacc
caaaatcttactactgaattgattgatggccagcggaagcttttggctcttcttgctgca
ggaaacacgaaggcattgaatcccattgccatgcagcaaaataatggcccaatggctgct
catcctgagatggtattgtctgtacaacaggttgaggcacctctggatccaacaaaggaa
ctaacaagattgatatctgagaggaaatatgaggaagcgttcaccatggctcttcagaga
agtaatgtttccatcgtgtcttggctatgttctcaggttgatttgcatgcaatttgttcc
acggtaccacttcctctaaatcaaggagtactgttagctcttctgcagcagttagcatgt
gatatcagcaatgaaacttcgcgcaaagttggatggatgacagaagtagccgttgcaatc
aatccaacagatccgatgatcacaatgcatgtacggccaatatttgagcaggtctataac
atactggcccaccaaagatcacttcccacaaccacggcatctgaagccgccaacgtccga
ctaataatgcatgttatcaattcagtattgatgagctgtaaatga
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integrated database retrieval system
