Elaeis guineensis (African oil palm): 105038752
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Entry
105038752 CDS
T03921
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105038752
03015 mRNA surveillance pathway
105038752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105038752
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105038752
mRNA cycle factors
P-body specific factors
105038752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
TetR_C_15
Xpo1
Motif
Other DBs
NCBI-GeneID:
105038752
NCBI-ProteinID:
XP_073116852
LinkDB
All DBs
Position
1:complement(116100345..116135212)
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AA seq
1205 aa
AA seq
DB search
MVPSSKREMEHPEDECRMVGEHHGKQDDEESAARLDEYKKSIDAKLALRHINLNPERPDS
GFLRTLDSSIKRNTAIIKKLKQINDEQREVLMDELRSVNLSKFVSEAAAAICDAKLRTSD
IQAAVQVCSLLHQRYKDFSPCFIQGLLKVFFPGKCGDDLDTDKNIRAIKKRSTLKLLMEL
YFVGVVEDVCIFVNIIKDLTSLEHLKDQDVTQTNLSLLTSFARQGRYFLGLHQPGQEVHD
EFFKGLNVTADQKKIFKKAFHLYYDAVAELLQSEHNQSLRMMELENEKIFSAKGELSDEN
AASYEKLRKSYDHLLRGVSSLAEALDVQPPVMPDDRRTTRVTTGVEVSSSASGKESSLFE
PVWDDEDTRAFYESLPDLRAFVPSVLLGEAEPKVNEQHPKTPEQQSESPMEPDIEVQDIA
ETCADAEPLPEGKVEEKGKDKEDKDKEKMKDSVKEKSKEKDTERKGEGEKDKVKVLDGTS
LDGLLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRGLFNVPRTSLELLPYYSRMVAT
LSTCMKDVPTMLLSMLEEEFNFLINKKDQTNIETKIKNIRFIGELCKFKIAPASLVFSCL
KACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLV
ENAYYLCRPPERSARVSKVRPPLYQYIRKLLFSDLNKSTVEHVLRQLRKLPWAECEVYIL
KCFLKVHRGKYSQVNLIALLTAGLNHYHDDFAVAVVDEVLEEIRLGLELNDYGMQQRRLA
HLRFLGELYNYEHIDSSVIFETLYLIIIFGHGTPEQDALDPREDCFRIRMIITLLQTCGH
YFDRGSSKRKLDRFLMYFQRYVLSKGPIPLDIEFDIQDMFAELRPNMTRYSSIEEVNAAL
IELEEHECMASIETASSEKHSDSESQKTPSQTATTITANGSILANGMEENGRSHEDPPDS
ESYSDSGSIDQEGHEDEEELLYEDKSDDRSEGDGDDEDDGGPIGSDEEDSVQVRQEVVEV
DPKEEEDFDRELRALMQESLESRKPELRARPTLNMMIPMNVFEGSRDTRATEGESGEDTM
DEEGGSGAGNKVRVKVLVKRGNKQQTKQMYIPQDCSLVQSTKQKEAAELLEKQSIKRRIL
EYNEREEEESNGISSQTGTWIQTGGSIGSTRPVGRGSWDGAGRQGGARQRHHSSGGFYHG
HGRRR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggttccttccagtaaacgagaaatggaacatccagaagatgagtgtcggatggttggt
gaacatcatggtaaacaggatgatgaggaaagtgctgctcgccttgatgaatataagaaa
tcaattgatgcaaaacttgctctccgtcatatcaatctgaatcctgaaaggccagactca
ggttttctcaggacgttggactccagtattaaacgcaatacagcgattattaaaaagctt
aaacagataaatgatgagcaacgagaagttttgatggatgaattaagaagtgtcaactta
agcaaatttgtcagtgaagctgcagcagctatttgtgatgccaagcttagaacttcagat
atacaagctgctgtgcaggtctgctcgttgcttcatcagagatacaaagacttctcccct
tgctttattcagggcctgttgaaagtattctttcctggaaaatgtggtgatgatttggat
acagataaaaacataagagcaataaagaaaaggagcactctgaaacttctaatggaactt
tattttgttggagttgtagaggatgtctgcatttttgtaaatattataaaggatcttact
agcttggaacatttaaaggatcaggatgtaactcagacaaatttgtcccttctcaccagt
tttgctcgacaaggcaggtacttcttagggctccatcagccgggacaagaagttcatgat
gagttctttaagggccttaatgtcactgcagatcaaaaaaaaattttcaagaaagcattt
cacttatattatgatgctgtagctgaactacttcaatctgagcacaatcagtctcttcga
atgatggaacttgagaatgaaaagatctttagtgctaaaggggagctcagtgatgagaat
gcagcttcctatgagaagcttcggaagtcttatgatcacctacttcgtggtgtctcctct
ttagctgaggcccttgatgtgcaacctccagtaatgccagatgataggcgcacgactagg
gtaaccaccggtgttgaagtatcatcttcagcttctggcaaggagtcttctttgtttgaa
cctgtatgggatgatgaagatacaagggcattttatgaatccttacctgatctgagagct
tttgttccttctgtattattgggagaagctgagccaaaggtaaatgagcaacatccgaag
acaccagaacaacaaagtgaatctcccatggagccagacatcgaagtccaagatattgct
gagacctgtgcagacgcagaacctttaccagagggaaaagtagaggaaaaaggcaaggat
aaagaggacaaagataaggaaaagatgaaagattctgtaaaagaaaaatcaaaagagaag
gatactgaaaggaaaggagaaggtgaaaaggataaagttaaagtccttgatggtacaagc
ttggatggtctgttacagaggcttccaggttgtgtgagccgtgacctcattgatcagttg
acggttgaattttgctacttgaattcgaaggcaaatcgaaagaaacttgttaggggtttg
ttcaatgtcccgaggacttccttagaattactaccatactattctcgaatggtagcaaca
ttgtcgacatgtatgaaagacgttccaactatgcttttgtcgatgttggaagaagagttc
aactttttgattaataaaaaggatcagacaaacatagagacaaagataaagaacatcagg
tttattggagagctgtgcaaatttaaaattgcacctgcaagccttgtttttagttgcttg
aaggcttgtttagatgacttcactcatcataacatagatgttgcttgcaatcttcttgag
acatgtggccggtttctgtatcgatctccagaaactacaatacgcatggctaacatgtta
gaaatactgatgcgtttaaagaatgtcaaaaatttggatccacgtcacagtacacttgta
gaaaatgcttattacttgtgcagaccacctgaacgctctgctagagtctctaaagtacgc
cctccattatatcagtatatccggaaattgcttttttccgacctcaataagtccactgtt
gaacatgttcttagacagttgcgcaagttaccttgggcagaatgcgaagtgtatatctta
aagtgctttctgaaggtccacaggggaaagtacagtcaagttaatctgattgctttactc
actgcaggcctcaatcattaccatgatgactttgcagtagcagtagtggatgaggttttg
gaggagattaggctagggttggaattgaatgattatgggatgcagcagcggcgccttgct
cacctgcgattcttaggagagctgtacaactatgagcatattgattcatctgtaattttt
gaaacattatacctgattatcatttttggacatggaacaccagaacaagatgcactggat
ccacgagaagactgcttccggatcaggatgataataacacttcttcagacatgtggtcat
tattttgatcgaggttcttcaaagaggaagcttgatagatttttgatgtattttcagaga
tatgtccttagcaaaggtccaataccgctggatattgagtttgacattcaggatatgttt
gccgagttacgaccaaacatgactcgttactcatccattgaggaagtcaatgctgcattg
attgaacttgaagaacatgagtgcatggcctcaatagaaacggccagcagtgagaagcac
tcggatagtgaatctcagaaaactccatcacaaacagccactactatcacagccaatggc
agcatcttggcaaacggaatggaggaaaatggcaggagccatgaagatccaccagacagt
gaaagctattcggacagtggcagtattgatcaggaaggacatgaagatgaggaagaactg
ttgtacgaggacaaatcagatgacagatctgaaggggatggtgatgatgaagatgatggg
ggacccattggttctgatgaggaagacagtgttcaggtcaggcaggaggtggtggaagtt
gatcccaaggaagaagaggacttcgaccgggagctgagagccctaatgcaggagagtttg
gagtcccgcaagccagagctacgggccaggcccactctgaacatgatgataccaatgaat
gtttttgaggggtctagagatacacgggccactgagggggagagcggggaggacacgatg
gatgaggagggtggcagtggtgcagggaacaaggtgagagtgaaggtgcttgttaagagg
gggaacaagcagcagacaaagcagatgtatattcctcaggactgctccctcgtgcagagc
acaaagcagaaagaggctgcggagctgttggagaagcagagcattaagcggaggatcctg
gaatacaatgagagggaagaggaggaatcaaatgggatctcatcccagactggaacttgg
atacaaactgggggcagcattggtagcactaggccggtgggtcgtggcagttgggatggt
gcaggaaggcaaggaggagcacggcagcggcaccattcatctggtgggttttatcatgga
catggcaggagaagatga
DBGET
integrated database retrieval system
