Elaeis guineensis (African oil palm): 105039370
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Entry
105039370 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105039370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105039370
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105039370
Spliceosome [BR:
egu03041
]
Complex C
Other components
Step II factors
105039370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
T2SSE
AAA_30
nSTAND3
AAA_7
AAA_24
AAA_16
AAA_33
SRP54
cobW
ATPase
ABC_tran
ResIII
Motif
Other DBs
NCBI-GeneID:
105039370
NCBI-ProteinID:
XP_010913811
UniProt:
A0A6I9QT77
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Position
1:160591506..160619082
Genome browser
AA seq
1265 aa
AA seq
DB search
MEGEGKVVDLNRTSDVLEPDTGIKGGLCVPNKEKLLYRAPERKSTLGLDVLASAKRGSKG
DGFKVPAERQISAISSLDIDEDEKAGSSIIEDSASGSPQGGSSRASRRYRGTGAEEKSCS
ESTVTREGEGGYSSRRRRENETPRHEVSTPRSSRSIRSYSPDYDEENNKRRYHSDRGYFK
RKDENGRSSHQQKDATDRERKRSRHERASRTPVRSDWDDGRWEWEDTPHRDSRDRYSMSR
RDLRPSPSPMLAGASPDARLVSPWLGGFTPRSAASPWDSISPSPVPIRAAGSKKSSDSRQ
SGKSHLLTFSLPASSEDHGADQDSYRDYEISEEMRQEMDYNADRAWYDREEHNTMFDTDG
SSFFLGDDTSFQKKEAELAKKLTRKDGTLMTLAQSKKLSQLTADNAQWEDRQLLRSGAVR
GTEVQTEFEDEDERKVILLVHDTKPPFLDGRVVFTKQAEPVMPLKDPTSDMAIIARKGSA
LVREIHEKQSMNKSRQRFWELAGSKLGDILGVQKTAEQIDADTAVVGDEGEVDFKEDAKF
AQHMKSKGEAVSDFAKSKSISQQRQYLPIYSVREELLQVVRENQVIIVVGETGSGKTTQL
TQYLNEDGYAVTGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTII
KYMTDGVLLRETLKDSDLDKYRVIIMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA
TLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKTPCEDYVEAAVKQAMTIHITSAPGDILI
FMTGQDEIEATCYALAERMEQLTASTSRAVPKLLILPIYSQLPADLQAKIFQKAEDGARK
CIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRT
GPGTCYRLYTDTAYQNEMLPNPVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQENI
LNSMYQLWVLGALNNVGSLTAIGWKMVEFPLDPPLAKMLLMGEQLGCINEVLTIVSMLSV
PSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCNDHFLHVKGLRK
AREVRSQLLDILKSLKIPVTSCGMDWDVVRQAICSAYFHNAARLKGVGEYVNCRNGMPCH
LHPSSALYGXGYTPDYVVYHELILTTKEYMQCVTAVEPQWLAELGPMFFSVKESDTSMLE
HKKKQKEEKTAMEEEMENLRKEQAEIDRTNKEREKEKRARRQQQVVMPGLRQGSSTYLRP
KRMGL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggggaaagttgtggacttgaacagaacaagtgatgtcttggaacctgat
acaggcatcaagggagggctctgtgtgcctaataaggagaagttattatatagagccccc
gagagaaaatcaactttaggcttggatgtgcttgcttctgcgaaaagaggatcaaaaggt
gatggttttaaagttcctgcggaacgacaaatttcagccattagttctttagatatagat
gaagatgagaaggctggttcttctataatagaagattctgcaagtggttcacctcaaggt
ggcagcagtcgtgcttctcgtcgctatcgtggaactggtgctgaagagaaatcatgctcg
gaatccactgtcacacgtgaaggtgaaggcggatattcttctcgcagacggcgagaaaat
gaaactccacgccacgaggtctccactcccagaagttcgcggagtattcggtcctatagt
cctgattatgatgaggagaacaacaaacgtagatatcatagtgatagagggtatttcaaa
agaaaagatgagaatgggagatccagtcatcagcagaaggatgctacagatcgtgaaagg
aaaaggagtcggcatgaacgtgcttcaagaacacctgttagatctgattgggacgatggg
aggtgggaatgggaagatactccacatcgagatagtcgagataggtattctatgtctcgt
agggatctgcgtccttcaccatctcctatgttggcaggggcatcccctgatgcgcgctta
gtttctccatggttgggtggtttcacacctcgttccgcagcttcgccatgggacagtatc
tccccttctccagtcccgatacgtgctgctggttcaaagaaatcttcagactcgcgtcaa
agtggaaagtcacatctgcttactttttctcttccagcaagttctgaggaccatggtgct
gatcaagattcttacagagattatgagatcagtgaggagatgcgtcaagaaatggattat
aatgctgatcgtgcatggtatgacagagaggagcataatacaatgtttgatactgatggc
tcatcattctttcttggggatgacacttctttccagaagaaagaggcagagttggcaaag
aaactgactcgcaaggatggaactttgatgacactcgcccagagcaaaaagttgtcgcag
ttaactgctgataatgctcagtgggaagacagacagcttttgagatctggagctgttaga
ggaacagaggtgcagacagagtttgaggatgaggatgagcgcaaagttattcttctggtt
catgatacaaagcctcctttcttggacgggagggtggtatttacaaagcaggctgaacct
gtcatgccattaaaagatcccacatcagacatggctataattgcccgcaaaggctctgct
ttagttagagagattcatgaaaaacagagtatgaacaagtcacgccaacgattttgggag
ctagcaggatcaaaacttggtgacatattaggggttcagaagacagctgagcagattgat
gcagatactgcagttgtaggagatgagggagaagttgattttaaggaggatgcaaagttt
gcacagcacatgaaaagtaagggtgaagcagtcagtgattttgccaagtcaaaatccatt
tcacagcaaagacagtatctccctatatattctgtccgtgaggaattgttgcaggtagtc
cgtgaaaatcaggtgattattgtagttggagaaactggttctggaaagacaacacaacta
acacagtatcttaatgaagatggatatgctgtgactggcattgtcggttgtacacaacct
agacgtgtagcagccatgagtgttgcaaaacgagttagcgaggagatggaaacagagtta
ggtgataaagttggctatgctattcgctttgaggatgttactggtccaaatactataata
aagtatatgacagatggagtgcttctgcgtgaaacattgaaggactcggacctggacaaa
tatcgagttatcatcatggatgaagcacatgagagatcactaagtactgatgttttgttt
ggcatactcaaaaaggtggttgctcggagacgtgacttcaagctcattgtgacatctgca
acattaaatgctcaaaagttctccaatttctttggaagtgtaccaattttccatattcct
gggaggacatttcctgtgaacatcttgtatagcaaaacaccctgtgaagactatgtagaa
gctgcagtgaagcaggcgatgactatccacatcactagtgctcctggtgacatcctcatt
ttcatgacaggacaggatgagattgaagcaacctgctatgcccttgccgaacgtatggaa
cagctcactgcatccacaagcagggcggtccccaagcttctgatactgccgatctactct
cagctgccagctgacctgcaagcaaagatttttcagaaagcagaggatggggctcgcaaa
tgcatcgttgcaaccaacattgctgagacatcacttacagtggacggtatcttctatgtc
atagacacgggatatggtaagatgaaggtctacaatcctaggatgggtatggatgctctc
caagtgtttccagtcagccgagcagctgctgaccagcgggctggacgagcaggcaggact
ggccctgggacatgctatcggttgtacacagatacagcataccagaatgagatgctaccc
aaccctgtgcctgagatccagagaactaatctggggaatgtggttttgttgctcaagtcc
ttaaaaattgaaaacctcttggatttcgactttatggaccctcctccgcaagagaacatt
cttaattccatgtatcagctctgggtgttgggtgccttgaataatgtgggtagtctcaca
gccataggctggaaaatggtcgaattccctctagatccgcctcttgccaaaatgttgttg
atgggagagcagcttggatgtataaacgaagtgttgacaatcgtatctatgctctcggta
ccatcggttttctttcgacccaaggaccgagcagaagagagcgatgcagcaagggagaag
ttctttgtcccagaatccgaccacttgactcttttaaacgtttaccagcagtggaaatca
aaccaatatcgtggggactggtgcaatgatcacttcttgcatgtgaaggggcttcggaag
gccagggaagttcggtcccagctactagatatactcaagtccttgaaaattcctgtgact
tcatgcgggatggactgggatgtggtgaggcaggcaatctgttctgcatatttccacaat
gctgctaggctaaagggtgttggtgagtatgtcaattgccggaatggaatgccctgccat
ctgcatcccagcagtgcactatatggcnttggatatactccggattatgtggtttatcat
gaacttatactgacaactaaagagtacatgcaatgtgtgaccgcagttgagcctcagtgg
ttggcagagttggggccgatgtttttctctgttaaggagtcagatacatccatgctcgag
cacaaaaagaagcagaaggaagagaagacagccatggaggaggagatggaaaatctgagg
aaggagcaagccgaaatagacaggacaaacaaggagagagagaaggagaaaagggcaagg
cgacagcagcaagtcgtaatgccaggcttgcggcagggttcttctacttatctgagaccc
aaaagaatgggattgtag
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integrated database retrieval system
