Elaeis guineensis (African oil palm): 105040068
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Entry
105040068 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105040068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105040068
03009 Ribosome biogenesis [BR:
egu03009
]
105040068
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105040068
Spliceosome [BR:
egu03041
]
Complex A
U1 snRNP components
U1 related factors
105040068
Complex B
105040068
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105040068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
WW
SnoaL
Motif
Other DBs
NCBI-GeneID:
105040068
NCBI-ProteinID:
XP_029118831
UniProt:
A0A8N4F213
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All DBs
Position
1:182661692..182674944
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AA seq
679 aa
AA seq
DB search
MATEEAAQASLGPRFAPEELIIPTPWKGLIDGSTGLLYYWNSEKNVTQYEKPATSGPPLP
TGSSPSASMPKLAQTPTIHTLPPNVTASQQPGQQMVQEAVQQVQQQQPSQQIFQQAGQLT
QQQQQLSQQLPFQQSGQQMPIQRSGQQSQQLQQMSKQQVTQQLXQTPHQQISYPQEQRQQ
AMQFSSYQQGQQSQGVPYQQGQQLRVPQFPHQQQTRESQMMLQGGQQPXGSQIPHSQGLQ
MMPQVLQHPQGLQIAHQQGQQSHGSHNGNQLGQQTQGQQVGFQSVEEATCQGGKQAGLSL
PLDQQSSLISSNHHLPATLLQVNISPVGGHSIQPQKQLSGASPVSAQQNASTLQLQPVGM
DLSYQQQQTSGCTIPNQPGHTLIXPPVGLKRGYDDDRHERGRNEFDSSPRMEEPMELLRQ
PRVANLPLSQSQQGDNVPAPFMTFESTGIPPEILREMHLAGFLSPTLIQAQGWPIAVQNR
DIVAIANTGSGKTLGYLIPAFIHLRXCGNNSRXGPTVLVLAPARELALQIQEEAIKFGSS
SGVSCMCLYGGAPKGPQLGEIERGADVIVATPGRLNDVLEMKKINFCQVSFLVLDEADHM
LDMGFEPQIRKIVNEIPPHRQTLMYPATWPKEVRKIARDLLKNPVQVNIGSVDEPAANKS
ITQVLYHHHNSMLYYRLLQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggaggcggctcaagcttcactgggcccacgatttgcacctgaagaacta
ataatcccgacgccttggaaagggttgattgatggaagcactggtctcttgtactactgg
aactccgaaaagaatgtcacccaatatgaaaagccagctacctcaggccctccactgcca
actggttcttctccctcagcctccatgcccaagttggcccagacacccacaattcacact
ttacctcctaatgtcactgcatcacagcagcctggccaacaaatggttcaagaggcagtg
cagcaagtgcagcaacagcagccaagtcaacagatttttcagcaagcaggccagctaact
caacagcagcagcagctgagccagcaattgccgtttcagcagtcaggtcagcaaatgccg
attcagcggtcaggtcagcaaagtcagcagctgcagcaaatgtcaaagcagcaggtcaca
cagcagctttagcagacgccacatcagcaaatttcttaccctcaggaacagcgacaacag
gcgatgcaattttcttcttatcagcaggggcagcaatctcaaggggtaccataccagcag
gggcagcaactgcgggtgccacaatttcctcaccagcaacaaacacgggaatcacagatg
atgctacaaggggggcagcaaccgncaggttcacaaatcccacactcccagggccttcag
atgatgccccaggtgctccaacacccacaggggctacagattgctcatcagcaggggcaa
caatcacatggttcgcataatggaaaccagctagggcagcagacgcaaggacagcaagtt
gggttccaaagtgtggaggaagcaacttgccaagggggaaagcaggctggtctttcgttg
cctctggaccaacaaagcagtctgatatcttcgaatcatcaccttccagccacgcttctg
caggttaatatttctcccgtgggaggacattctatccaacctcagaaacagcttagtggg
gcatctcctgttagtgcacagcagaatgcttcaacacttcagttgcagccggtgggcatg
gacttgagctatcagcaacagcaaactagtggttgcacaattccaaatcagccggggcac
acactgatctgacctcctgtgggattgaaaaggggttatgatgatgatcgacatgaaaga
gggagaaatgaatttgattcttccccaaggatggaagagccaatggagcttctgcggcaa
ccaagggttgcaaatcttcccctttcacagagtcaacagggcgacaatgttcctgcacca
ttcatgaccttcgagtccactggcatccctccagagattcttagagagatgcatttggct
ggatttttgtctcccacactgatacaggcgcagggatggccaattgcagtacaaaacaga
gacatagtggccattgccaacactggctcaggaaagaccctgggctatcttattcctgca
tttatccatctgagatgatgtggaaataattctcggntgggtccaacagtgttggttttg
gctccggctcgggaacttgctttacaaatacaagaagaggccatcaagtttggttcttct
tccggtgtttcttgcatgtgtctatatgggggagccccaaagggtcctcagctaggagaa
atagaacgaggagcagatgtaatagtggctacacctggtcggcttaatgacgttcttgag
atgaagaagatcaatttctgccaggtttcttttcttgtgcttgatgaagcagaccatatg
cttgacatgggttttgaacctcagatacgaaagattgtgaatgagattcctccacacagg
cagactctcatgtacccagcaacttggcctaaggaggtgaggaaaatagccagggatcta
ctaaagaatcctgttcaggttaatattggcagtgttgatgagcctgctgcaaacaagtcc
attacacaggtcctctaccaccatcacaacagcatgttgtactacaggctcctacagtag
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