Elaeis guineensis (African oil palm): 105040647
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Entry
105040647 CDS
T03921
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105040647
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105040647
Spliceosome [BR:
egu03041
]
Complex C
Other components
Complex C specific factors
105040647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_30
AAA_19
AAA_7
ResIII
nSTAND3
Helicase_RecD
AAA_11
AAA_23
AAA_29
T2SSE
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
105040647
NCBI-ProteinID:
XP_010915577
UniProt:
A0A6I9QUM8
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All DBs
Position
3:complement(116678682..116714373)
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AA seq
692 aa
AA seq
DB search
MSKYWKPGSERPRTVLVDDEEGGVLFVSTPASSSGFGYLSLERQRQRLPVYKYRTAILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVASRVAEEMGV
KLGEEVGYTIRFEDQTKPNVTKIKFLTDGVLLREMMDDPLLIKYSVIMVDEAHERSLSTD
MLLGLLKKVQRRRPQLRIIISSATIDAKSMATFFHIRRRNIGQATEDPAPSELPATLSVE
GKGYNVEIHYVEEPVSDYLQAAVDTVMSIHDKEPPGDILVFLTGQDDIDAAVQLLTEDAQ
NNGLLVLPLYSGLSRADQDLIFSPTPKGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR
FYNPIADIENLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYFVKEMPAEGIPEMQRS
SLVSCVVQLKALGIDNILGFDWLASPSPEAMIRALEVLYSLGILDEDAKLTSPTGFQVAE
IPLDPMISKMILSADTFGCSEEIITIAAVLSVQSIWVSVRGAQREFDEVKLRFAAAEGDH
VTYLNVYKGFIHSGKSSQWCYKNYINYQAMKKVVDIREQLGRLLRRLGIVLKSCERDTQV
LRKAILAGFFAHACCLEEFSPNGMYKTIKSSREVYIHPSSVLFRVNPKWVVYHSLVSTDK
HYMRNVIAIDPSWLIEAAPHFYQLRKPNPAPY
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagtactggaaaccaggctccgagaggccacggacggttctcgtcgacgacgag
gaaggcggagtgctcttcgtttccacccctgcctcctcctccgggttcgggtatttaagt
ctggagaggcagcggcagaggcttccggtgtataaatatcggactgcaattctttatttg
gtggagaatcacgctaccactataatcgttggagaaacgggaagcggaaagaccacccag
ataccccagtatcttaaagaggcaggttgggctgaaggtggtcgagttatagcttgcacc
cagccaagacgattggctgttcagtctgttgcctcacgggtagctgaagagatgggtgtc
aaacttggagaagaggttggctataccattcgttttgaggatcaaacaaagccgaatgta
accaagatcaaatttctaaccgatggggtgttgcttagagaaatgatggatgaccctctg
ctgatcaagtacagtgtcataatggtagatgaggctcatgaaagatccctttcaacagac
atgttactaggcctcttgaaaaaggtccaacgccgtagacctcagctgcgtataatcatt
tcatctgcaacaattgatgcgaaatccatggcaacctttttccatattaggagaaggaat
ataggacaggctacagaagatcccgcacctagtgagctgcctgccacactttctgttgaa
ggaaaaggttacaatgtggaaattcattatgttgaggagcctgtctccgattatttacaa
gctgctgttgatactgtgatgtcaattcatgataaggaaccacctggtgacattctggtc
ttccttacaggtcaagatgatattgatgctgctgtacagttacttacagaagatgctcaa
aacaatggtttgttagttttgccactatactcggggctttcacgtgcagatcaggacctc
attttttctcccactcccaagggaaaaaggaaagttgtgatatcaactaatattgctgag
acatcattgactttggagggaatagtgtatgtcgtagatagtgggttctcaaagcagcgc
ttttataatccaattgccgatattgagaacttggttgtggcaccaatatccaaggcttct
gcaagacaaagggcagggagggctggaagggtacgaccagggaagtgttttagactttat
actgaagaatattttgtcaaggaaatgcctgcagaaggaattccagaaatgcaaaggtca
agccttgtttcctgcgtggtacagttgaaagccttgggcatagataatatactgggcttt
gattggctagcttctccatcgccagaggcaatgatccgagcacttgaggttctctactcc
cttggaattcttgatgaagatgccaaactcacatcacctactggttttcaagttgccgag
attccattagaccctatgatctccaaaatgatcttatcagcagatacatttgggtgttcg
gaggagataataactatagcagcagttctttctgttcagtctatatgggtttcagttaga
ggagcacagagggaatttgatgaagtgaagctgcggtttgctgctgctgagggagatcat
gtaacatacctgaatgtctacaagggatttattcactctggcaaatcttctcagtggtgt
tacaaaaactatataaattaccaagctatgaagaaggttgttgacatcagggaacaactc
ggcaggttattgaggcggcttggcatagttctaaaatcttgtgaaagagacacacaggta
ctaagaaaggcaatccttgcgggtttttttgcccatgcatgctgcttggaggagttcagt
ccaaatggaatgtacaagacaattaagagttcccgagaagtatacatccatccatcttct
gtactcttcagagtcaatccaaagtgggtggtctaccattctcttgtttccactgacaag
cattatatgcgcaatgtaattgctattgatccatcctggcttattgaagctgcaccacat
ttctatcaactccggaagcccaatcctgctccctactga
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