Elaeis guineensis (African oil palm): 105041044
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Entry
105041044 CDS
T03921
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105041044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egu03400
]
105041044
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105041044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
105041044
NCBI-ProteinID:
XP_010916139
UniProt:
A0A6I9R0T6
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Position
3:complement(108647059..108662617)
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AA seq
942 aa
AA seq
DB search
MEDDYSPEPNKLPELKLDARQAQGFISFFKTLPRDPRAVRFFDRRDYYTVHGDNAAFIAR
TYYHTTTALRQLGSGPDGISSVSVSKTMFETIARDLLLERTDHTLEFYEGSGSNWRLTKT
GTPGNIGSFEDVLFANNDMQDTPVTISLFPVFRENQYTVGLSFVDITKQKLGLAEFLDDS
QFTNVEAVMVALGCKECLLPMESGKSVEFKALHGVLTKCNVLLTERKKSEFKSRDLVQDL
SRVIRGSTEPVRDLLSDFEYALCALGALISYAELLADDGNYGRYTIEKYNLDSYMRLDSA
AMRALNVLENKTDLNKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVDEINWRLDLVQA
FVEDAELRQGLRLHLKRISDIERLTHNLKKKTANLQPVIKLYQSSIRLPHIKDVLEHYEG
QFAALVRKKYLDPLEHWMDEDGLNKFIALVEVAIDLNQLENGEYMISPKYNQNLAALKEQ
LNAVEQQIQNLHKQTANDLDLSLDKTLKLEKGTQFGHVFRITKKEEQKVRKKLSTHYIVL
ETRKDGVKFTNSKLKKLGDQYQKVLSEYISCQKVIVAQVVDATASFSEVFETLSVILSEL
DVLLSFADLATSCPIPYVRPDITPSDKGDIILEGSRHPCVEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDRASVSVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVTRAPSLFAT
HFHELTALAHVDGHEPHSSPNLGVANYHVGAHIDPESHKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVTLARSKAEELEDFSETFSINNDLKEEAGSKRKRVCSPDDIARGAGRAHKF
LQQFSALPLDQMDLNQAMEQVKKLRSELEKDAAGYPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgattactcaccggagcccaacaagcttcccgagctcaaattagatgcccga
caagcccaggggtttatttccttcttcaaaaccctaccccgtgatcctcgggctgtgcgc
ttcttcgatcgccgggattattatactgttcatggtgataatgctgctttcattgcaagg
acatattaccacactactactgctttgagacaattggggagtggtcctgacggtatttcc
agtgttagcgtaagtaaaaccatgtttgaaactattgctcgcgaccttttattggagaga
acagatcataccctggagttttatgagggaagtggatcaaactggaggctgacaaaaact
ggtacacctggtaacattggtagttttgaagatgttttgtttgccaacaatgacatgcag
gatactccagttaccatttcattgtttcctgtcttccgtgaaaaccagtacactgtggga
ctaagttttgtcgatataaccaagcaaaaacttggtttggcagagttccttgatgatagc
cagttcacaaatgttgaagcagttatggtcgctctaggttgcaaggagtgtcttctaccc
atggaaagtgggaaatcagtggaattcaaagctcttcatggtgtactgactaaatgtaac
gttcttttaactgaaagaaagaaatctgagttcaagtcaagagatctggtacaggacctt
agtagggtcatcagaggttctactgaacctgttcgggatctactatctgactttgagtat
gctttgtgtgctctaggggctttaatctcatatgctgagttacttgcagatgatggcaat
tatgggcgttataccattgaaaagtacaacttagatagttacatgagattagattctgct
gccatgagagcattgaatgttctcgagaacaaaacagatttaaacaaaaattttagtttg
tttggtctaatgaatagaacctgcacagctggcatgggtaaacggttgctaaacaggtgg
cttaaacaacctctcttagatgtggatgaaattaattggagactggatctggttcaggca
tttgtagaggatgcagaacttcgccaaggactgaggctacatttaaaaagaatttcagat
attgagagattgacacataatctgaagaagaagacagctaacttgcagccagtcataaaa
ctctatcagtcaagcattagacttccacacatcaaagatgttcttgagcattatgaaggg
caatttgcagcactggtaagaaaaaaatatctggacccattagaacattggatggatgaa
gatggactgaataagtttattgctcttgttgaagttgccattgaccttaatcaacttgag
aacggtgagtatatgatttcgcctaaatataatcaaaacttagctgcactgaaggaacaa
ttaaatgcagtggagcagcaaatccaaaatttacacaaacaaactgcaaatgatcttgat
ctttctcttgataagacattgaagttggaaaaagggacacagttcggacatgtttttagg
atcacgaagaaagaggagcaaaaagtgaggaaaaagctaagtacccattatattgttctg
gaaactcgaaaggatggagtaaaatttacaaactccaaacttaaaaagttaggagatcaa
taccaaaaggtacttagtgaatacataagttgtcagaaagtgattgttgctcaagtagtt
gatgctacagcctcattttctgaggtatttgagacactttctgtgattctttctgagctt
gacgttttactaagttttgctgacctggcaaccagttgtccaattccatatgtacgacca
gacattacaccctcggataaaggtgatattatactagaagggagtcggcatccatgtgtg
gaggctcaagatggtgtgaattttatacctaatgattgtactcttgtacgtgggaagagt
tggttccagatcattaccggacctaacatgggtggtaaatccacatttatacgacaggtt
ggtgtaaatgtattaatggcgcaagttggctgctttgttccatgcgatagagcaagtgtt
agcgtacgcgattgcatttttgctcgtgttggtgctggtgattgccaacttcgtggagtt
tccacctttatgcaggaaatgcttgaaactgcctccatcttgaaaggagcctctgagaag
tcgctgataattattgatgagttgggccgtggcacttctacttatgatggatttggtttg
gcttgggctatttgcgagcaccttgtgcaggtgaccagagcaccaagtttatttgcaact
cactttcatgaactgactgcattagctcatgttgatggtcatgagccccatagttcaccc
aatcttggagtggcaaattatcatgttggagcacatatagatccagaaagtcataaatta
acaatgctttataaggttgaacctggtgcctgtgatcaaagttttggtattcacgtggca
gaatttgcaaactttcctgaagctgttgttactcttgctagaagtaaagctgaggagttg
gaagatttttctgagacatttagcattaacaatgatttgaaagaagaggcaggatccaag
cgcaagcgagtatgcagtcctgatgacatcgccagaggtgcaggtcgggctcataaattc
ctgcagcagttttctgctttgccactagaccagatggacttgaaccaggccatggagcaa
gttaaaaaactgaggtctgagctggagaaagatgcagctggctatccttggctccagcaa
ttcttctga
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