Elaeis guineensis (African oil palm): 105042368
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Entry
105042368 CDS
T03921
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105042368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105042368
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
105042368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
105042368
NCBI-ProteinID:
XP_010917841
UniProt:
A0A6I9QZA5
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All DBs
Position
3:2942791..2967108
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AA seq
946 aa
AA seq
DB search
MEEDFPNPESSLKHKAEALQALVSGPLAAASARLSGRSRGIASGKDFHFYNNFDVFKAPA
REIVAKCDSSLRGVASSGPLWGSKKPPRLPDDLDDAFDWLVNLNDEFLERFGVSVDEFKS
LREKEEESGGKISSMDLDGGFQMVYGKKKKGSMRESEKDDEDRALSSAAGVKVVSRDKKT
TAPRSKVPFHIPSIPRPQDKYNILVNNKNQPFEHVWLEKSEDGSRFIHPLEKLSVLDFLD
RNIGEHEPVKPLPVESTPFKLVEELNELKELASKLRFVNEFAVDLEHNQYRSFQGLTCLM
QISTRTEDFIIDTLKLRIHVGPYLREIFKDPSKRKVLHGADRDILWLQQDFGIYLCNLFD
TGRASRILQLERNSLEYLLHYFCGVNANKEYQNADWRLRPLPDEMLKYAREDTHYLLHIY
DLMKSRLISASTNENDLLLEVYKRSSEICMQLYEKELLTDTSYLHIYGLQEADFNSKQLA
VVAGLFQWRDSIARAEDESTGYILPNKTLLEIARQTPVTSVKVRRLVKSKHPFVERYIDS
VISIIRSSIANSAAFERIAVQLKKGRLEASPKQDMEAISCNSNLVTAVGQDDHTIGARNI
DTTHSAELAAASTATIGDCTKPADSGLFSGPICALRKCHQEEKSDNMLLPENGCSLKLSD
TAGTMQKMDSGSTEHLQPARKASIASVQILRKPSCGFGTLLGNSSSRRKFNADKGGNAEQ
VKNENKVEQIKSTVALPFHHFSGGEKLSEVSPEVNLNHRRVENQQQCTGYVTEMMKLEEV
IPLEKEPDNSLSAADSPKADDSRKHREWFPPLQENGSGGSFQSESDNAEGLASSLDLSSS
FEKCFRSINERRSSRQNHKPSQEPEVNYQLKPFDYAAARKNMKFGEVGGKDIAESDNRLQ
TSSVSGETHKGLASGQSRGEEKVKGFQHPRRRQAFPPSGNRSTTYH
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggacttccctaaccccgaatcgtctctgaaacacaaggcggaagccctccaa
gctctcgtctctggtcccctcgccgccgcctccgcccgcctctccggccgctcccgcggc
attgcctccggcaaggactttcacttctacaacaacttcgacgtgttcaaggccccggcc
agggagatcgtagccaaatgtgattcttccctgaggggtgttgcctcctcgggccctctc
tgggggagcaagaagccgccgcggttgcccgacgatcttgacgatgccttcgactggctt
gtcaacctgaatgacgagtttcttgagcggttcggcgtctcggtggatgaattcaagagc
ttgagggaaaaggaggaggagagcggcgggaagattagctcgatggacttggacggtggg
tttcagatggtttatgggaagaagaagaaggggagcatgcgggaatcggagaaagatgat
gaggatcgggctttgagctcggcggccggggttaaggtagtgtcgagagacaagaagact
acagccccgcgctcgaaggtgccctttcatataccatccattcccaggccacaagataag
tacaatatcctggtaaacaacaaaaaccagccatttgagcatgtttggttggagaagagc
gaggatgggagccgcttcatccatccattggagaagctgtctgtattggactttcttgat
agaaacattggggaacatgagccagttaaaccccttcctgtagagagtaccccatttaag
cttgtggaggaactcaacgagttaaaggaattagcttccaagttgcggtttgtaaatgaa
tttgcggttgatttggagcacaaccaatataggtcatttcaaggattgacttgtttgatg
caaatttctacaagaacagaggattttataatagacaccttgaaattgcgtattcatgtt
ggtccatacctaagagaaatctttaaagacccctcaaagagaaaggtcctacatggggca
gaccgcgacatattatggcttcaacaggactttggcatatacttgtgcaacctctttgat
acagggcgggcatcaagaattttgcagttggagagaaatagtctggagtatcttctgcat
tacttttgtggagttaatgcaaataaagaataccagaatgcagattggagattgcgccca
cttcctgatgaaatgctcaagtatgccagagaagatacacactatctcctacatatatat
gatttaatgaaaagtaggttgatatcagcatctacaaatgaaaatgatcttctgttagag
gtctacaaacgtagcagtgaaatttgtatgcagctttatgaaaaagaactcttgaccgac
acatcatatctccatatatacgggttacaggaagctgatttcaactcgaagcaacttgct
gtcgttgctgggctatttcaatggagagatagtattgcccgtgcagaggatgagagcact
ggctatatattgccaaataaaactctacttgagattgcgaggcagacgcccgtcacttct
gtaaaagtacgccgcttggtgaaatcaaagcacccatttgtcgagcgctatatcgactct
gttataagcattattaggagttcaattgcaaattctgctgcttttgagagaattgctgta
cagctgaagaaagggcggctggaagcttcacccaagcaagatatggaagcaatcagctgc
aattctaacttggtcactgccgttggtcaagatgatcataccattggtgctaggaacatt
gataccactcatagtgctgaattggccgcagcttctacagctactataggtgattgcacc
aaacctgcagattctggacttttcagtggtcccatttgtgcactgaggaaatgtcatcaa
gaagaaaaatcagataatatgttattgccagaaaatgggtgttcactcaagctatctgac
acagctggaacaatgcagaagatggatagtggaagcactgagcatttacaacctgctagg
aaagctagcattgcttcggtccaaatattgagaaagccatcttgtggttttggaacgttg
ttaggaaattcttcttccaggagaaagtttaatgctgataaaggagggaatgctgaacag
gtcaagaatgagaacaaagtagagcagataaaatcgacagtagcccttccattccatcat
ttttctggtggagaaaagctttcggaggtgagtcctgaggtgaacctcaaccatcgacgg
gtagagaatcagcagcagtgtactggctatgtcaccgagatgatgaaattggaagaggtc
ataccattggagaaggaaccagacaattcgctgtctgctgcagatagcccgaaggctgat
gatagtaggaagcacagggaatggttccctcctctacaagaaaatggcagtggtggaagt
tttcaatcagaatctgataatgcggaggggctagcatcatccttggatctttcctccagt
tttgagaaatgctttcggtcaatcaatgagaggagaagctctcgtcagaaccataagccg
tctcaagagccggaggttaactatcagttgaagccatttgactatgctgctgctaggaaa
aatatgaagtttggagaggtcggaggaaaggacatagctgaaagtgataatcggcttcaa
acttcatcagtttcgggagagacgcataaaggcttggcatctggtcagtctcgaggtgaa
gaaaaagtgaagggctttcagcatcctcggcgccgccaggcttttccaccttcaggcaac
agaagcacgacatatcactag
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