Elaeis guineensis (African oil palm): 105043649
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Entry
105043649 CDS
T03921
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105043649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105043649
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105043649
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105043649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
105043649
NCBI-ProteinID:
XP_073111820
LinkDB
All DBs
Position
4:16689720..16724466
Genome browser
AA seq
2492 aa
AA seq
DB search
MRTRDSPAPSTLFGVLVPSSPDETLAFSSSVSPKKEALEGRIFLCCSYASLLPTVSNQIR
LLLQSLNDSNFDSIFRELCQFAEYGSEGGILLVQTCLDQVKFNGEEIQNLQLKRDLVSAI
FKFLLDRPNFSTVFSEALKGTSMSEGFLKDLSSALNLSVAEKVGIGLALSDSEIPDLKIR
GQNFCIAQIEELCANPTSIVSNERIQDIVMFLYQSEGLSKHVDCFTKILSLLQLKDSSFF
LPTTMLTNDNSWRYLDLFSGCSGNDFETVLAEIEKEMSMADVMTELGYGCTIDTSHCKEM
LSLFQPLNDVTLSKLLGTIACTHTGLEDAQNTYATFCAAVGGSLASDSSLLNSWNVDVLV
DSIKQLAPKTNWTRVMENLDHEGFNVPDEKSFYLLMSIYTKACEDPFPLHAVCGSVWKNA
EGQLSFLKYAVAAPPDVFTFAHCSRQLTFADSAYLMKKQGNQAWFCLDLLEVLCQLAERG
HASSVRLMLEHPLTHCPEILLVGIGHINTAYNLLQYEVSSTIFPVILKDSTKIGTIHHLW
RVNPNLVLRGFVDTHIDPNNLLRIVDICQELKILSPVLDATPFPFCIKLAAIASRKEHIN
LENWLNENLSTYKDAFCEDCVKFLKEVLGDGANDAADSSVQQQHAAILNVYQETCSTFFK
VLQAHSGQLVSHQLFEEIKSLHVSSNPKIQNAITDAATSDGSSEAIEAEANTYFHQMFSG
QLSIDAMVQMLARFKESSDKREQMIFDCMIANLFEEYKFFPKYPDRQLKIAAVLFGSLIK
HQLVTHLTLGIALRGVLDALRKSVDSKMFMFGTKALEQFMDRLVEWPQYCNHILQISHLR
GTHAELVSVIERALARVSSSQSESNGGNSLSTDQQQGSGPASVESMEASEASWQLMGSAS
TQLGQQFSSLQLQQRHPGFLGDRLKGSTTPANYSKPLLSHTSQSAVVSAPVDSVANQKAT
VSQSLQTTIPHHSTGVTTAVSSSPSFLRARSITPAGMLRQPSYSTGFGAALNIETLVAAA
ERRDTPIEAPAPEVQDKILFMINNISTTNMDAKAKEFSEVLKEQYFPWFAQYMVMKRASI
EPNFHDLYLKFLDKVNSKLLNKEIVKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLGK
FTIGRNQALRAKEIDPKVLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGIL
SLLAEIYNLPNLKMNLKFDIEVLFKNLGVDMKEVKPTALLKDRIREVEGNPDFSNKDVIA
SQPPVIAEANAGIMQTLNHVEIQPDVNSASHPASHPNVLAQYTSPVHLASNAIGEDDKVG
GLIVPERVPSGQGLSQVTPSPFSLSQLLTIIPNSDSYININPKLSSMGSQLQFHRIIQVA
MDRAIREIVSPVIQRSVTIASRTTKELVLKDYAMESDDGIISRAAHLMVGTLAGSLAHVT
CKEPLRVALSSHLRSLLQAINITSERTEQIVQILTTDHLDLGCAVIENVASEKAVELIDG
EIAPSFAALRKQREAAGSAYYDAGTYAQGPFARLPEALRPKPGRLSLAQQRVYDDFIKNI
WQNQSGQNSSVVPSGPPGMAGSSSNSTLPRVYASSSASLNSGAFSTSQVAPFSSVAQPLD
LIAEESDRGSAQLLSASPTHVGANDIVMQSGEANSIAASFPATAASSDLNMELGSVVPPS
PTTSAADRLGTVLPESMLTAGDALDKYQQVAQKLEALIAKDAKDARDTDIQGIVAEVPDI
ILRCVSRDEAALAVAQKAFKSLYENASNGTHVASYLAILAAIRDVCKLVVKELTSWVIYS
DEERKFNKEITIGLIRSELLNLAEYNVHLAKLIDAGRNKAATEFAISLVQTLVIQEPGVS
ASELYNVIEALSKLATRPGSPESLQQLVEVARNNMNAAPNFTTSEKVRQSRDNKKQQVLS
SRSLTNREEYNANDLTVADPAGFRDQVAVLFSDWCRICELPATNDSVYGHYISQLQQSGL
LKGDDITDRFFRILMELSVSHCVLPEQVSASGSLSLQSAQQLQQVQQLPYFSIDSYAKLV
VLIMKFCSVDQGSSKAILLPKILSVTVRVIQKDAEEKKLSFNPRPYFRLFVNWLLDLASP
DPVLDSANFQVLASFANAFHALQPLKVPGWSFAWLELVSHRSFMPKLLTCNSPKGWPFFQ
RLLVDLFKFMEPYLRNAELGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSC
IQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSDVDGALKAKQIKAEIDEYL
KTRPEGSPFLTELKQRLLLPQSEANLAGTRYNVPLINSLVLYVGMQAIQQLQSKSTSQHA
PAQQMTHGPPMDIFLVGAAMDIFQSLIKNLDTEGRYLFLNAVANQLRYPNNHTHYFSFVL
LYLFAEASQDIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTRCAPE
IEKLFESVSRSCGGPKAVDDGLVSSGIPDGNH
NT seq
7479 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgcgactctcctgctccttcgaccctcttcggtgttcttgtaccctcctcc
cccgacgaaaccctcgccttttcttcctccgtctctcccaagaaagaagccctagaaggg
cgtatctttctttgttgcagctatgcttcccttctccccaccgtatccaaccagattcgt
ctcctgctgcagagcttgaatgattccaacttcgattcgatcttccgtgagctctgtcag
tttgcagaatatggaagtgaaggtggcattttgttggttcaaacttgcttagaccaagtg
aaattcaatggtgaagagattcagaacctgcagctgaaacgggatcttgtgtctgccatt
tttaagtttttgctggatagaccaaatttcagcacagtttttagtgaagcattgaaagga
acatcaatgagtgaaggttttctaaaagatctttcaagcgcgttaaatctttcagtagcg
gagaaagttggcattggacttgctctgtctgactctgaaattccagatttgaaaattaga
gggcaaaatttctgcattgctcagattgaggaactatgtgcgaatcctacttccattgta
tctaatgagcgaattcaggatattgttatgtttctctatcagtctgagggtctttcgaag
catgtagattgttttaccaaaatcttatctttattacaactcaaggacagctctttcttt
ctaccaaccacaatgcttacaaatgacaactcttggaggtatttggatctgttctctgga
tgctctggcaatgattttgagactgttttggcggagatagagaaggaaatgagcatggct
gatgttatgacagaattgggctatggttgtacaattgacacttcacattgcaaggagatg
ctctctctttttcagcccctcaatgatgtgacactttctaagctacttggcacaattgct
tgtactcataccggtcttgaagatgcccagaacacatacgcaacattctgcgcagctgtt
ggtggcagcttagcaagtgattcctcattgttgaattcatggaatgttgatgtccttgta
gattcgattaagcaacttgccccaaaaacaaattggacacgtgtcatggaaaacctagat
catgagggctttaatgttcctgatgagaaatcgttttaccttctaatgtctatatacact
aaagcatgcgaggatccatttcctctccatgctgtatgtgggtctgtgtggaagaatgct
gaaggccaattatcttttttaaaatatgctgtggctgcaccacctgatgtatttacattt
gcgcattgttcaagacaactgacatttgctgattcagcatatctgatgaaaaaacaagga
aatcaggcatggttttgtctggatcttttggaggttttatgtcaacttgctgaaagaggc
catgccagctcggttcgactgatgctagaacaccctcttactcactgtccagagatttta
cttgttggaattggtcacataaataccgcatataatcttctccagtatgaagtatcttcc
accatatttcctgtgatattaaaagattctacaaagattggcaccattcatcatctctgg
cgtgttaatccgaatctagtccttcgaggatttgtagatacacatattgatcccaataat
ctactaagaattgtggacatttgtcaggaactgaagattttgtcaccagtattggatgca
actccatttccattctgcattaaattggctgcaattgcttctcggaaggagcatataaat
cttgagaactggttaaacgagaatttaagtacatataaagatgctttctgtgaggattgc
gttaagttcttaaaagaagtacttggtgatggggcaaatgatgctgcagatagttctgtt
caacaacaacatgctgctattttgaatgtttaccaagaaacgtgctctacattcttcaag
gttcttcaagcccattctgggcagcttgtttctcaccaactttttgaagaaataaagagc
ctgcatgtttcatctaacccaaagattcaaaatgccataacagatgctgcaacttctgat
ggaagctcagaagctatagaggcagaggcaaacacttacttccatcaaatgttctcagga
cagctgtccattgatgcaatggttcaaatgcttgcacgctttaaagaatcatctgataag
agggagcagatgatatttgattgcatgattgcaaatttatttgaagagtacaagttcttc
cccaagtatccagataggcaactaaaaatagctgctgtgctctttggttctcttataaag
catcaacttgtgactcatctcacacttggtattgctttgcgtggagttcttgatgcattg
cgtaaatctgttgattcaaagatgtttatgtttggtaccaaggccttggagcagttcatg
gatcgtttggtagaatggccacaatactgcaaccatatattacagatatctcatttgcgt
ggaacacatgctgaattggtttctgtcattgaacgggcacttgcaagagtttcgtccagt
cagtcagagtcaaatggtggtaactctctttctactgatcagcaacaaggttctgggcca
gcttctgttgaaagcatggaggcatctgaggcatcatggcaattgatgggatcagcctcc
acacagttggggcagcaattttcatctttgcagctgcaacagagacatccaggatttctt
ggtgacaggcttaaaggctctacaacacctgctaattattcaaaaccccttttatcacat
acttcacagtctgcagttgtttctgcacctgttgattctgttgctaatcagaaggcaact
gtttcgcaatctttgcaaaccacaattccccatcattccactggtgtgacaactgctgtt
tcatcgtctcctagttttctacgtgctcgaagtattacgcctgcaggcatgcttcggcaa
ccttcttacagcacaggatttggggctgccttgaacattgaaacacttgttgcagcagct
gaaagaagagacactccaatagaggctcctgcaccagaagttcaagacaaaatattattc
atgataaataacatttcaactacaaatatggatgctaaagcaaaggaattcagtgaggtt
ctcaaagagcagtactttccctggtttgcacagtatatggtcatgaaaagagcaagcatt
gaaccaaattttcatgacttgtatttgaagttcttggacaaagttaactcaaaactactt
aataaggaaatcgttaaagctacttatgagaactgcaaggtgctgctgagatcggatctt
ataaaatcaagttcagaagaacgttccttgcttaaaaatcttggtagctggcttgggaag
ttcacaattggtaggaatcaagcattacgagccaaagaaatagatccaaaagttctaata
atagaggcatatgagaagggattgatgattgcggtgattccatttacctctaagattctg
gaaccatgccagtccagtttagcatatcaacctccaaatccatggactatgggcatcctt
agtttacttgctgagatatataacctgccaaacctcaaaatgaacttaaaatttgacatt
gaggttttatttaagaacctgggtgtggacatgaaagaagttaaaccaactgcacttctt
aaagataggattcgtgaagtggaggggaatccagatttttcaaacaaggatgtgattgca
tcacagccaccagtcattgctgaagctaatgcaggaattatgcaaacattgaatcatgtc
gagattcaacctgatgtcaacagtgcatctcatccagcaagccatccaaatgtactggct
cagtatacttctcctgtccatcttgcttcaaatgccataggggaggatgacaaagttgga
ggtctaatagtacctgaacgtgttccatccggtcagggactcagtcaagttacaccatca
ccattttctcttagtcagcttctgacaataattccaaattctgattcttatattaatatc
aatcccaagcttagttccatgggttcacaattgcaattccacagaattattcaagtcgct
atggatagggccatcagagaaattgtgtctcctgtcattcagcgcagtgttacaatagct
agtcggacaactaaagaacttgttttaaaggactatgctatggagtcagatgatggtatt
atatctcgggcagcacatttaatggttggcactttggctggaagtttagctcatgtcact
tgcaaggaacctcttcgtgtagctctatcaagtcaccttcgaagtctacttcaggccata
aatattactagcgaacgtacagagcagattgttcagattcttacaacggatcatctagat
cttggctgtgcagtgattgaaaatgttgcatcagagaaggctgtggagttgattgatggt
gagatagctccctcatttgctgcactaagaaagcagagggaggcagctgggtctgcttac
tatgatgctggtacctatgctcaaggtccatttgcacgtctgccagaggcacttcgaccc
aaacctggtcgactatcccttgcccaacagcgagtctatgatgactttatcaagaatata
tggcaaaatcaatctggtcaaaattccagtgttgtgccttctggtccacctggtatggct
ggtagctcaagtaactctaccctgcctcgcgtttatgcttcaagttcagcctctctgaat
tctggtgccttctcaacttcacaagtagctccattcagctcggtagctcagccattggat
ctgattgcggaagaatcagatcgtggttcagcacaactacttagtgcctctccaactcat
gtcggggcgaatgatattgttatgcaaagtggtgaagcaaattctattgcagcatcattt
cctgctactgctgcttcctctgatctgaatatggagctgggatctgtagtaccaccatca
cctacaacttctgctgcagatcgactgggaactgtattacctgaatcaatgttgactgct
ggagatgcattggataaatatcaacaagtcgcacaaaagctggaagccttgattgctaaa
gatgccaaagatgccagagatactgatattcagggaattgttgctgaggttccagatatc
attctcagatgtgtaagccgagatgaggctgcattggctgttgctcagaaggctttcaaa
agtttatatgagaatgcatcaaatggtacccatgttgcctcctacctagctattcttgct
gccatacgagatgtttgcaagcttgttgtcaaagaactgacgagctgggtgatctactcg
gatgaggagcggaaattcaataaagaaataaccattggtcttattcggtctgagttgcta
aatcttgctgagtacaatgtccatctggcaaaacttattgatgcagggaggaataaagct
gccacagaatttgccatatccctcgtccaaacattggtcattcaggaacctggagtcagt
gcatcagaactgtacaatgtcatcgaagccttgtcaaaattagcgacgaggccagggtca
ccagagtcattgcaacagctagttgaggtcgcccggaataatatgaatgctgcacctaac
tttaccactagtgagaaagtcaggcagtcgagggataataagaagcaacaggtactttcc
agccgttccttgacaaacagagaggaatataatgctaatgatcttacagtagcagatcct
gctggctttcgagatcaggttgctgttctctttagtgattggtgtcggatttgtgagctt
ccagctacaaatgattcagtgtatggtcattacatctcacagttgcaacaaagtggtttg
cttaagggcgatgatatcacagaccgtttctttcgtattctgatggagctttctgtttca
cattgtgtacttcccgagcaagttagtgcttcaggctcattgtcacttcagtcagctcag
caactccaacaagtccagcaattgccctacttttccattgactcatatgcaaagcttgtg
gtcctaattatgaagttctgttcagtggatcaaggatcaagtaaagctattcttctccca
aagatcctatctgttactgtaagagtcatccaaaaagatgcagaagaaaagaagctgtct
ttcaaccccaggccatacttcaggttgtttgttaactggcttttggaccttgcttctcca
gaccctgtccttgacagtgccaactttcaggtgttggcatcttttgcaaatgctttccat
gctttgcagcccttgaaggttcctggttggagctttgcatggcttgagttggtgagtcat
agaagcttcatgccaaaattgctgacgtgcaactctcctaagggttggccatttttccag
cgtttgcttgttgacttgttcaaatttatggagccctacctgagaaatgccgagttagga
gagccggttcattttctgtacaaaggcactttacgggtgctgcttgtactgcttcatgat
tttcctgagttcctatgtgactatcacttcagtttctgtgatgtgatccctcccagttgc
attcaaatgcggaatgttattctcagtgcattccctcgcaatatgaggcttcctgatcct
tccactcccaacttaaagatcgatctgctagctgaaattagccaatccccacgtattcta
tctgatgttgatggtgctctaaaagctaagcagattaaggctgagattgatgagtatctc
aagacaagaccagaaggatctccctttttgaccgaattgaagcaaagattgctgcttccc
caaagtgaggcgaacctggcagggacccgttacaatgtgccgttgatcaactcacttgtg
ctttatgttggcatgcaggccatacaacaactgcagagcaagtccacttcgcagcatgca
cctgcacagcagatgacccatggccctcctatggatatttttctagttggagcggctatg
gatatattccagagcctaataaagaacttggatacggaaggccgctacctctttcttaat
gcggttgccaaccaattgcgctatccaaacaaccatacacattacttctcatttgtcctt
ctgtacttatttgcagaggcaagccaggacattatccaggagcagataacacgggtgctg
ttagagcgcttgatagttaaccgccctcatccatggggtcttcttatcactttcattgag
ctaatcaagaatccacggtacaacttctggaaccggtcgttcacacggtgcgcgccagag
attgaaaagctttttgaatcagtttcaagatcttgtggtggtccgaaagctgtggacgat
ggtttagtctcgagtggcattcccgatggcaaccactga
DBGET
integrated database retrieval system
