Elaeis guineensis (African oil palm): 105043814
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Entry
105043814 CDS
T03921
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105043814
03015 mRNA surveillance pathway
105043814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105043814
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105043814
5.6.2.5 RNA 5'-3' helicase
105043814
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105043814
mRNA cycle factors
Common to processing body (P body) and stress granule
105043814
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
NAT10_TcmA_helicase
nSTAND3
UvrD-helicase
ATPase
PhoH
SRP54
AAA_22
AAA_16
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
105043814
NCBI-ProteinID:
XP_010919834
UniProt:
A0A6I9R9S9
LinkDB
All DBs
Position
4:13326941..13356999
Genome browser
AA seq
1263 aa
AA seq
DB search
MAADSVVNNLYETASQPDTGGDAYTFLEFNTQGDDYDYSEFRELSQPIRSSAWPPPPAPD
AVPDSPSANLPAPEAGAGSLASASSSKGRGGAGNQASAADALAAGMSGLSFEETGEDENF
EYGKGDFTEHACRYCGVQNPACVVRCNIPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVC
LHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQW
CPLIDDRCFLPWLVKVPSEQEQLRARHISAQQINKVEELWKTNPDATLEDLEKPGVDDEP
QPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPK
EDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFS
VDFVWKSTSFDRMQGALKTFAVDETSVSGYIYHHLLGHEVELQIVRNTLPRRFGAPGLPE
LNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQL
AEKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELS
SSDEKKFKALKRATEREILQNADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLI
PLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPFRLQVQYRMHPSL
SEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRT
EAANVEKIVTSFLRSGVIPSQIGVITPYEGQRAYIVNHMSRNGALRQQLYKEIEVASVDS
FQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSL
LTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYSDRRLFLGGGPGIVHADNFGPISSSGPN
ADRRGGRGKGHSYMPFGPPNGTHKPGVQPAGYPLPRIPVPPFPGGPHSQPYAIPTRGAIH
GPIGAVSQVPQPGNRGFGAGRGNAGGPIGGHLSHQQTSQQALGGIGSAFDFPSLDNPNSQ
PPTGGPLSQTGLMTQIPVQGLSQTFREGFSMGGMSQDFLGDDFKSQGSHVAYNVTDFSTQ
ASQGGYGVDYVAQGQAGFPGSYLNQNSQPGYSHLGTGNDFISQDYMPHGSQGLLTQAGLN
DPSQDESSQSHFSMTGPGPLQSQGLMNPLYSQPFTHYNTQPQNLQLPHPQSQSAPNQKLH
YNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgattcggtcgtcaacaacctctacgagacggcatcgcagcccgacaccggc
ggcgacgcctacaccttcctcgagttcaacacacagggggacgactacgactactccgag
ttcagagaactctcccagcccatccgatcctcagcctggccccctccgccggcgccggat
gccgtgccggactccccctccgccaatctaccggctcccgaggccggcgcggggtcgttg
gcttccgcctcgtcctccaagggcaggggtggggccggcaatcaggcttcggctgccgat
gcccttgcggcggggatgagcgggcttagcttcgaggagacgggggaggacgagaatttc
gagtatgggaagggggatttcacagagcatgcgtgccggtattgcggggtgcagaacccg
gcatgtgtcgtgaggtgcaacatcccgtcgtgccggaaatggttctgcaactcgagggga
aatacatcgggatcccacatcgtcaatcacctggttcgagcaaaacacaaggaagtttgt
ctccacaaagacagcccattaggagaaacaatccttgaatgctataactgtggctgccgc
aatgttttccttcttggctttatctctgcaaaaacagagagtgtggtggttctcttgtgc
agagagccgtgtttgagtgtcaatgcattgaaagatatgaattgggatctaagccaatgg
tgtccactcattgacgatcggtgtttccttccatggcttgttaaggtcccttctgaacag
gaacagctgagagcacggcatatcagtgctcagcaaattaacaaagtggaagagctgtgg
aagacaaaccctgatgctactctagaagatctcgagaagcctggagtagatgatgagcct
cagcctgtagccttgaagtatgaagatgcttatcagtatcaaaatgtctttgcaccactc
atcaagcttgaagctgattatgataagatgatgaaagagtcacagagtaaagataacgtg
acagtacgatgggatattggccttaacaagaaacgcattgcttactttgtctttcccaag
gaagacaatgaactaaggcttgttccgggagatgagttgcgtttgcgttattcaggagat
gcagctcatcctgcatggcagtctgtgggacatgtgatcaagctaactgctcaggaggag
gtcgcactagaacttcgtgctaatcagggagttcctgttgatgtgaaccacggctttagt
gtagattttgtttggaagagtactagctttgatcgaatgcaaggtgccttgaaaacattt
gcagtggatgaaactagtgtcagtgggtacatataccatcaccttttaggtcatgaagtt
gaacttcaaatagttcgtaacacgctaccccgccgctttggcgcccctggcctaccagaa
ctaaatgcatcccaagtttttgcggtgaaaagtgtccttcagaaaccaattagtttgata
caggggccccctggcacaggaaaaactgtcacatctgctgctattgtataccacatggct
aaacaaggacaggggcaggtcctggtatgtgctccaagtaatgtggctgttgaccaactg
gctgagaagataagctcaactggtttgaaggttgttaggctttgtgctaaatcaagagaa
gctgttatgtctcctgttgagcatctgacacttcactaccaggttcggcatcttgataca
tctgaaaagagtgaacttcataagctccaacagctaaaggatgaacaaggtgaattgtcg
agcagtgatgaaaagaagtttaaggcattgaaaagggccactgagagggagatattacag
aatgctgatgtcatttgttgcacctgtgttggtgctggagatcctcgactgtcaaatttc
cgattccgccaggttcttatagatgagtctacccaagcaactgaacctgagtgtcttatt
cccttggttcttggggtcaaacaggttgttcttgttggagatcattgtcaacttggtccg
gtgataatgtgtaaaaaggcagctcgtgctgggttagcacagtctctttttgaacgcctt
gtgcttcttggacttaaaccattcagactgcaggtccaatatcggatgcatccttcccta
tcagaatttccttctaatagcttctatgagggcacccttcaaaatggagtgacaataaat
gaaaggcaatcatctggcattgattttccttggccggttcccaatcgtccgatgttcttt
tatgtccagatgggacaagaggagataagcgcaagtggaacttcttacctaaatagaact
gaggctgcaaatgttgaaaaaattgttacatcatttttgagaagtggtgttatacctagc
cagatcggtgttataacgccatatgaagggcaaagggcgtatatagttaatcacatgtca
aggaatggtgctcttaggcaacagctttataaggaaattgaggttgccagtgttgactcc
ttccagggtagagaaaaagattacattatcttgtcttgcgtacggagcaatgaacatcag
ggaattggatttcttaatgatccacgcagattgaatgttgcactaactcgagctcgttat
ggcattgttattttggggaatccgaaagtccttagcaagcaaccattatggaatagctta
ttgacacattacaaggagcatgaatgccttgtagaaggaccactgaataacttgaagcaa
agtatgatacaatttcaaaagcccaaaaagatctacagtgaccgtagacttttccttggg
ggtggtccagggatcgtgcatgctgataactttgggcccatcagttcttcaggccctaat
gctgatagaagaggtggacgtggtaaaggtcactcttatatgccatttggtccgccaaat
ggtacccataaacctggtgtgcaaccagcgggatatccccttcctcgaatccctgttcca
cctttccctggaggcccccactctcagccatatgcaattccaactcgtggggctattcat
ggacctattggagctgtttcacaggtcccgcaacctgggaataggggttttggggctggt
cgtggaaatgccgggggccctattggtggccacctttcacatcagcaaacctcccagcaa
gctttgggtggtatcggttctgcttttgatttcccttccttggacaatccaaacagtcag
cctcctactgggggtccattatcccaaacaggactaatgacacagataccggttcaaggt
cttagtcaaacttttcgtgaaggattttccatgggtggcatgtctcaggattttttgggg
gatgactttaaaagtcaaggatcacatgttgcatataatgttacagatttctccactcag
gcttctcagggtggttatggtgttgattatgttgctcaaggacaggctggattcccaggg
agttacttgaaccagaattcacagccaggatattcccatttgggcaccggaaatgatttc
atatcacaggactacatgcctcatggatcacaaggtcttttaacccaagcaggactcaat
gacccttcacaagatgagtcatctcagagccattttagcatgactggacctggtcctctt
caatcacagggcctgatgaatcctctctactctcaacccttcactcattacaacacacag
cctcaaaatttgcaactcccacatccgcaaagtcagagcgcacccaaccaaaaacttcat
tacaatggctga
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integrated database retrieval system
