Elaeis guineensis (African oil palm): 105044205
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Entry
105044205 CDS
T03921
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105044205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105044205
03012 Translation factors [BR:
egu03012
]
105044205
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105044205
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105044205
Translation factors [BR:
egu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105044205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
NACHT
Prefoldin_2
BEX
Motif
Other DBs
NCBI-GeneID:
105044205
NCBI-ProteinID:
XP_010920326
UniProt:
A0A6I9R4I4
LinkDB
All DBs
Position
4:4734298..4749072
Genome browser
AA seq
1045 aa
AA seq
DB search
MGFVVRTHCIRLPCCFCLVPRMSVGCGHHTFASWTNPLRLRLPLGIALRHPCPMSYRPNY
QGGRRGGGGRGRGGRGGGGRGGGGGRGEQRWWDPQWRAERLRQMAGEAEKLDENEWWNKI
KQLKEGGQQELIVKRNFGRDGQNVLADMARRQGLHFHAYNKGKTLVFSKVPLPDYRADLD
ERHGSTQKEIKMSTETERRVENLLARSKETLTINDSTTTSIQMARQSVPNVAVSKPESTE
DDNAFKEKFNIELRDLQNSRKATPSARVMQSFREKLPAFKVKDEFLKAVADNQVLVVSGE
TGCGKTTQLPQFILEEEIERLQGAKCNIICTQPRRISAISVAARIASERGENLGETVGYQ
IRLEAKRSAQTRLLFCTTGVLLRRLVQEPDLGGVSHLLVDEIHERGMNEDFLIIILRDLL
PRRPDLRLILMSATINAELFSTYFGNAPIIHIPGLTYPVAEVFLEDVVEKTRYRIKSEFD
NFQGNSRRRRRQPSTKNDPLTEMFEDVDIDAQYKNYSMSTRQSLEAWDGTQLDLGLVEAT
IEYICRHEKDGAILVFLTGWDEISKLLDKIKGNNFLGNSSRFLVLPLHGSMPTVNQREIF
DRPPSNVRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAH
QRRGRAGRVQPGVCYRLYPKVIHDAMPQYQLPEILRTPLQELCLNIKSLQLGAVATFLAK
ALQPPDPLSVKNALELLKTIGALDEMEELTPLGCHLCTLPLDPNIGKMLLIGSVFQCLDP
ALTIAAALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEAWKDAKRSGKERA
FCWENFLSPMTLQMMEDMRNQFLDLLSDIGFVNKARGVKAYSQYGDDLEMVCAILCAGLY
PNVIQCKRRGKRTAFYNKEVGKVDMHPSSVNAGVHLFPLPYMVYSEKVKTTGIYIRDSTN
ISDYALLLFGGSFMPSKTGEGIDMLGGYLHFSAPKSVIQLIQRLRGELDKLLQRKIEEPG
LDIPAEGKAVVAAAVELLHNQNVYH
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgtcgtcagaacccactgcataaggttgccctgttgcttctgcctggtccct
cgcatgtccgttggctgcggtcaccacaccttcgcttcttggacaaaccctctacgtctc
cgtcttcccttagggatcgctcttcggcatccttgccccatgtcgtaccgccccaactac
cagggcggccgcagaggtggcggcggaagaggccgcggtggcaggggcggcgggggaagg
ggtggcggtggaggccgcggggagcagcggtggtgggatcctcagtggagagccgagcgc
ctccggcagatggccggcgaggcggaaaagctggatgagaatgaatggtggaacaaaata
aagcaattgaaggaaggtgggcagcaggagctgatagttaagcggaattttgggcgtgat
gggcagaatgttcttgcagatatggctcgaagacaaggcctccacttccatgcatacaac
aaaggaaagacacttgtgtttagcaaagttcctttgccagattaccgggccgatcttgat
gaacgacatggatcgacacagaaagagattaagatgtctacagagactgaaagaagagtg
gaaaacctcttagctagatcaaaagaaacattgactattaatgattccaccactacatcc
attcagatggccaggcaatctgtacctaacgtggctgtctctaaacctgaatcaacagaa
gatgataatgccttcaaggagaagttcaatattgaacttagggacttgcaaaactctcgg
aaggcaactcccagtgcaagagtgatgcagtctttcagggagaaactaccagcattcaaa
gtgaaagatgaatttttaaaagctgtagcagataatcaggtacttgttgtatctggagag
acgggttgtggtaaaactacacagctacctcaattcatactggaggaggaaatagaacgt
cttcagggggcaaaatgcaacataatatgtactcaaccacgtagaatatccgctatatct
gttgcagcacgaattgcatctgaaaggggcgagaatcttggagaaactgttggttaccag
atccgattggaagcaaaacgttcagctcaaacacgtcttctattttgcacaactggagta
ctgcttcggagactggttcaggagccagatttagggggtgtcagtcatttactggtggat
gaaattcatgaaaggggtatgaatgaggattttcttattataattttgcgtgaccttctg
cctaggcgtccagatcttcgtctaatattgatgagcgccacaataaatgctgagctcttc
tctacatactttgggaatgcaccaatcatccatataccagggctgacctatcctgtggca
gaagtgtttctggaagatgttgtggagaaaacacggtacaggatcaagtcagagtttgac
aattttcaggggaactcaagaaggagaagaagacaaccatcaaccaaaaatgatccattg
actgagatgtttgaggatgttgatattgatgcccaatataaaaactacagcatgtctacg
aggcaatctcttgaagcctgggatggtacccaactagatctgggtcttgtggaagcaaca
atagaatatatttgtcgccatgaaaaagatggagcaatcctagtgttccttacaggttgg
gatgagatatctaagctgcttgacaaaattaaggggaacaatttccttgggaattctagc
aggtttctagttcttccattgcatggttccatgccaactgtaaatcagcgtgaaattttt
gacagaccaccaagtaatgtgaggaaaattgttctagcaacaaatatagcagaaagtagc
attactatagatgatgttgtgtatgttattgactgtggaaaggcaaaggaaacaagttat
gatgctctgaataagttggcatgcctgttaccatcatggatatcgaaggcttcagcacat
cagaggcgagggcgtgcagggcgtgttcaacctggtgtttgctataggctgtacccaaaa
gttatacatgatgccatgccacaatatcaattgcctgaaattcttcgaactccactgcaa
gaactatgccttaatattaaaagcctacagcttggagcagttgccacattcttagccaag
gcacttcaaccacctgatccactctccgttaaaaatgcacttgaacttctcaaaacaata
ggggcactggatgaaatggaggaactcactcctcttggatgtcatctttgtaccctgcca
ttggatccaaatattggaaaaatgctgctcattggatctgtattccagtgtctagatcca
gcattgacaattgctgctgctctggctcatcgagacccatttgtcctgccaataaacagg
aaagaggaagcagatgctgcaaagagatcctttgctggtgattcttgcagtgaccatata
gctcttttaaaagcttttgaagcatggaaggatgcaaaacgtagtggaaaggaacgtgct
ttctgttgggagaatttcctatcccccatgacattgcagatgatggaagacatgcgaaat
cagtttcttgatttattatctgacataggttttgtaaacaaggctagaggagtcaaggcg
tatagccaatatggagatgatctggaaatggtatgtgctatcctttgtgctgggctttat
cccaatgtcatccagtgcaaaaggagagggaagaggacagcattctacaataaagaagtt
ggaaaagtcgatatgcatccatcttctgtgaatgcaggggtccatttattccctctgcct
tacatggtctatagtgaaaaggtgaagactacaggcatttacattagggactccacaaat
atatcggattatgctttgctcctctttggaggaagcttcatgccgagcaagactggagag
ggcatcgatatgctaggaggctatcttcatttctctgcaccaaaaagtgtaatccaacta
attcagaggttaagaggagaactcgacaaacttctgcagaggaaaattgaggagccaggg
ctcgatatccctgcagagggaaaggcagttgttgctgcagcagttgagttattgcacaac
cagaatgtttaccactaa
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