Elaeis guineensis (African oil palm): 105045134
Help
Entry
105045134 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
egu03009
]
105045134
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105045134
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
90S particles
Helicases
105045134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
ATPase
PhoH
HTH_ABP1_N
TsaE
ABC_tran
AAA_19
Motif
Other DBs
NCBI-GeneID:
105045134
NCBI-ProteinID:
XP_073113468
LinkDB
All DBs
Position
5:21960071..21971622
Genome browser
AA seq
1402 aa
AA seq
DB search
FPFLPLFLFQNLGFRGFGTCRPDDRNTSKRPRKEKEKSSYEWFLLSSLFVLARISPIFDF
GITWERMRSNSNDYDQSLGETVQFLGMEVTQDGLNSSADGSNAILLPEKKKNKSKDKGEA
PNQNKNKEVPVLSKSKQRKLKKLEEEKQKQLLQARSIKILEKCKIWDGAYSLLHSSGTIG
QAETMKEKRRRAVQLSKAGIDVPEDISPFKKKNQNVSDENEVTGKLDHQSHADSVCCDNS
VLPAKGKERDDGKHSKSVGIHSAATSKSQVVLDIGKDVVPSTMVVTDEEIDTCSVEDQKQ
SAFISSSCDKGHETDSKLLSVLPGKKADDLEVIYQNMKVPLDFMVQEQVNAPIVVHVSRP
LEVEEKRKDLPIIMMEQEIMEAINENSIVILCGETGCGKTTQVPQFLYEAGFGSSNHSDR
KGVIGVTQPRRVAVLATAKRVSFELGIRLGKEVGFQVRHDKMIGDSCSIKFMTDGILLRE
VQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRIINLRQKLYSEQQEKMLSGVKISPEN
MITQLKLVLMSATLRVEDFVSNRKLFHETPPVLEVPVRQFPVTVHFSKRTQEDYLGQAYK
KVMSIHKRLPPGGILVFVTGQREVEFLCKKLRRASEQLKEKNSMRKADNEITASSDVDMK
EIDEAFEIGSNSLDQQTDRFSSYEDDGNNPDMDSDLSNAESESELEVDSEDEDSFKSEAP
EKTGLVLDFLNDVESFSSLKASFEALAGNLSNQECKEKPSLPDAPSLGESMEVATSSAGA
LYVLPLYAMLPASAQLRVFEEAPDGDRLVVVATNVAETSLTIPGIKYVVDTGKEKVKTYN
YTNGMATFEVQWISKASAAQRAGRAGRTGPGHCYRLYSSAAFSKDDLFPDFSCPEISKIP
VDGVVLLMKFMGIDKVANFPFPTPPDTKALVEAELCLKALEALDSQGRLTPMGRAMAQYP
MSPRHSRMLLTVIYILRKQQGYARVNFVLGYAVAAASALSFQNPFLMQFGEKHGDDDMDQ
EKSDTEKMKDQEETLRQKKXKAMEREARARFCNPSSDALTIAYALQMFELAENSVQFCKE
NLLHLKTMEEMSKMRKQLLQLIFYQSKFCEEFAWNHGTADDVELSWRIRSDKHPLLMNEE
ELLGQSICAGWADRVAKRIRTVSGSSENDRKARAVRYQSCALKDTVFLHRWSSVSRSAPE
FLVYSELLQTKRPYMHGVTSVKSDWLVKYASSLCTFSAPLTDPKPYYEPLSDQVFCWVSP
AFGRHNWQLPLHSLPIKNDILRMSVFACALLEGQVLPCLGSIQMFLAAPPSCLLRPEALG
QRRVGDLLSRLKIGSRIIDSRAMLRDAWSQDPQFLHTEIKHWFQERFHDRFGDFWEQMHH
EVLLEGCELFPKRAKKERKKVK
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
ttcccctttcttccgttgttcctcttccaaaacctagggtttaggggttttggaacctgc
cgtcccgacgatcggaatacgagcaaaagaccgcgtaaagagaaagagaaatcatcgtat
gagtggttcttgctgtcctctctttttgtactggcaagaataagccctatttttgatttt
ggaataacgtgggagagaatgaggtcaaattctaatgattatgatcagtctttgggtgag
accgttcagtttctcgggatggaagtaactcaagatggtttgaattccagtgcagatgga
agcaatgccattcttttgcccgaaaagaaaaagaacaaatcaaaagacaaaggcgaggct
cctaaccagaataagaacaaggaagtgccagttttgagcaaaagcaaacaaaggaaatta
aaaaagttggaggaggagaagcaaaagcagctgttgcaagctagaagtattaagattcta
gagaaatgcaagatatgggatggtgcttattctcttctacattcttcaggcactattggt
caagctgagactatgaaggaaaaacgcagacgagctgtccaactttctaaagctggtata
gatgtgcccgaggacatttcaccatttaagaagaagaatcagaatgtttctgatgagaat
gaagtcactgggaagcttgatcaccaaagccatgcagacagtgtctgttgtgataatagt
gttctgcctgcaaaaggtaaggaaagagatgatggcaaacatagcaagtctgttggaatc
cattcagcagcaacaagcaagagccaggtggttctggatattggaaaagacgtggtgcca
tcaacgatggtagttacggatgaggagatcgatacatgcagtgtagaagatcagaaacag
tcagcattcatttcaagtagttgtgataaaggacatgagaccgattcaaagcttctttct
gtccttccaggaaaaaaggcagatgatttggaagtaatttatcaaaacatgaaggttcct
ttggatttcatggtccaggaacaagtgaatgctcctattgtagtgcatgtatccaggcca
ttggaggttgaggagaaaaggaaagatcttcccataattatgatggaacaggagataatg
gaagctatcaatgagaattctattgtaatattatgtggagaaacaggatgcggtaaaact
actcaggttccacagttcttgtatgaagctggctttgggtcgagtaatcatagtgacaga
aaaggtgtcattggtgttacccaaccacggcgtgtagctgttcttgccactgccaagaga
gtgtcatttgaattaggaatccgtcttggaaaagaagttggttttcaagttaggcatgac
aaaatgataggagatagttgctccatcaaatttatgacggatggcattttgcttcgagaa
gtccagagtgattttttactaaagcgatactctgtaattattctggatgaggctcatgag
aggagcttgaacacagatatactcattggaatgctttctcgaattataaatcttcgccag
aaattatattcagagcagcaggagaaaatgctttcaggagtaaaaatcagtcctgaaaat
atgatcactcaattaaagcttgtacttatgagtgctaccttgcgagttgaggacttcgtc
tcaaacaggaaattatttcatgaaaccccacctgttttagaggtccctgtcagacaattc
cctgtgacagttcacttctcaaagaggactcaagaagattatttaggacaagcttataaa
aaggtcatgtcaattcacaagagacttccaccaggtggcatacttgtatttgtcactgga
caaagggaagtggagttcttgtgtaaaaagttgcgaagagcatcagaacaattaaaagaa
aaaaattctatgaggaaggcagacaatgaaatcaccgcaagctcagacgtggatatgaag
gaaatcgatgaagcatttgagattggaagcaattcattagaccaacaaactgacaggttt
agctcctatgaggacgatggaaacaatccagatatggattctgatttatctaatgcggaa
tcggagagtgagctggaagttgatagtgaagatgaagattctttcaagtctgaagcacca
gagaagaccggtttggtgttagattttctaaatgatgttgaaagcttttcttctttgaag
gcttcattcgaggctttagctggaaatttgtccaaccaagaatgcaaagagaaaccaagt
cttcctgatgctcctagtttgggagaaagtatggaagttgcaactagttctgctggtgca
ctatatgttttgcccctatatgcaatgcttcctgcttctgcacagcttcgtgtatttgaa
gaggcacctgatggagatcggctggttgttgttgctactaatgtggccgagacttctttg
accatcccaggcataaaatatgtggtcgacactgggaaagaaaaggtcaagacctataat
tacaccaatgggatggcaacatttgaagtccagtggataagcaaggcatcagctgctcag
cgtgcaggaagagctggaagaactggacctggccactgttaccgcctctactcatctgca
gcctttagtaaagatgatctgtttcctgatttttcctgtcctgagatatccaagattcct
gtagatggtgttgtcctcctcatgaagttcatgggtattgataaggttgcaaatttccca
tttccaacacctcctgataccaaagctttggtggaagctgaactttgcttaaaggctctt
gaggcacttgatagccaaggaagacttacaccaatggggagggcaatggcacagtaccct
atgagtcctcgtcattcccgcatgcttctgacagttatttatatcctgaggaagcagcaa
ggctacgccagagtaaattttgtgttaggatatgctgttgctgctgcatcagctttaagc
tttcaaaatccttttctgatgcagtttggggaaaaacatggggatgatgatatggatcaa
gaaaagtctgatactgagaaaatgaaggaccaggaggaaacgctgaggcagaaaaagnta
aaagcaatggagagagaggctcgtgcaagattttgtaatcccagtagtgatgctttgaca
attgcatatgctttgcaaatgtttgagcttgcagaaaactcagtgcaattctgcaaagaa
aacttgcttcacttgaaaacaatggaagagatgtccaagatgaggaaacagctgctgcag
ctgatattttatcagagcaagttttgtgaagaatttgcatggaatcatggaactgctgat
gatgtggagctctcttggaggatccgttccgataagcatcccttactaatgaatgaagag
gagcttttagggcagtcaatatgtgctggttgggcagatagagttgcaaagcgtattcgt
actgtttcaggatcatcagaaaatgatcgaaaggcccgtgctgttcgttatcaatcttgt
gctttgaaggatacagtgtttctccaccgctggtcttctgtttctcgatcagcaccggag
tttctagtttacagtgaactacttcaaacaaagaggccatatatgcatggagtgaccagt
gtaaagtcagactggcttgtcaagtatgctagttctctttgcaccttctctgcaccactt
acagaccccaaaccttattatgagcctctaagtgaccaagtcttttgctgggtcagccct
gcttttggccgacataattggcagctcccattgcatagtttgcctatcaagaatgatatc
cttcgtatgtctgtatttgcttgcgctttgcttgaaggacaagtattgccgtgcctagga
tccattcagatgttcttggctgcgccaccatcttgcttattgaggcctgaagcattgggg
caaagaagggttggggatcttctcagcaggttaaagattgggtcaagaataattgatagc
cgagcaatgctgagagatgcttggagtcaagatcctcagtttttgcatacagagattaaa
cactggttccaggagagatttcatgatcggtttggagatttctgggaacaaatgcaccat
gaagttcttcttgagggctgtgaactttttcctaaaagggcaaagaaggaaaggaagaag
gtaaaatga
DBGET
integrated database retrieval system
