Elaeis guineensis (African oil palm): 105048471
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Entry
105048471 CDS
T03921
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105048471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105048471
03012 Translation factors [BR:
egu03012
]
105048471
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105048471
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105048471
Translation factors [BR:
egu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105048471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
ABC_tran
NACHT
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
105048471
NCBI-ProteinID:
XP_010926080
UniProt:
A0A6I9RGA8
LinkDB
All DBs
Position
7:complement(91214708..91238149)
Genome browser
AA seq
1214 aa
AA seq
DB search
MPYAAVLRGCLRTRPRMTMSLVPSATALLRSPTAPRNPSFNPTSAPMKSHSAGGGVYVPP
IPRLRSVIASANGTLTTARSVDYDWRDTGAGGGQGAITLNSTAPAPTAADGFPPYLRQQS
SHYARYAYDDYSDDDSDRDMEVSPASNKGASTLDNVDEWKWKLSMLLRNGSEQEVVSRER
KDRRDYEQLSALAERMGLYSRQYGKVVVFSKIPLPNYRSDLDDKRPQREVSIPNGLQREV
DHLLGEYLARKRTNRGSFPNIAFSRSSSTDSFTTDEGLSEQQDPPTSVVMEKILRRRSLQ
LRNQQQAWQESPEGQKMLEFRRSLPAYKEREALLAAISQNQVVVISGETGCGKTTQLPQY
ILESKIDAACGATCSIICTQPRRISAISVSERVAAERGEKLGESVGYKVRLEGMKGRDTR
LLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMS
ATLNAELFSSYFGGAPMIHIPGFTYPVRTHFLENVLEITGHRLTPYNQIDDYGQEKMWKM
QKQALRKRKSPIASVVEDALEAADFREYSPRTRDSLSCWNPDSIGFNLIESVLCHISRKE
RPGAVLVFMTGWDDINSLKDQLQANPLLGDPTKVLLLACHGSMPTAEQRLIFEKPNDGVR
KIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGR
VQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPEPL
SVKNAIEYLKIIGALDEKEELTVLGRHLSMLPVEPKLGKMLILGAIFNCLDPILTAVAGL
SVRDPFLTPFDKKDLAESAKSQFSCRDYSDHLALVRAYEGWKDAEREHSGYEYCWKNFLS
AQTLKAIDSLRKQFLFLLKDTGLVDENFSTCNKWSRDENLVRAVVCAGLYPGVCSVVNKE
KSISLKTMEDGQVMLYSNSVNGREAKIPYPWLVFNEKVKVNSVFLRDSTAVPDSVLLLFG
GNISRGGLDGHLKMLGGYLEFFMKPDLASTYLHLKRELEELIQNKLLNPRMDIQTSEELL
SAIRLLVTEDPCSGRFVFGRQELKPKKSKSLLPTNSGGGGDNPKSQLQTLLTRAGHDNPT
YKTKQLKNHQFRSMVEFNGMQFVGQPCGSKKLAEKDAASEALEWLNGGASSGSRDIDHMS
MLLKKSKKKHHRRT
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgccgcggtgctgcggggctgcctccggacccgcccccgcatgaccatgtct
ctggtcccctccgccaccgccctccttcgctccccgacggcccctcgaaatcctagcttt
aaccccacttcggcaccgatgaagagccattccgccggtggcggcgtctatgtcccgccc
atcccccgcctccgctccgttatcgcctcggccaacggcactctcaccaccgcccgatcc
gtcgactacgactggcgcgacaccggcgccggcggtggacagggggccatcaccctcaac
tctaccgccccagcccccaccgccgccgacggattcccgccctatctccgacagcagagc
tcccactacgcgcggtatgcgtacgatgattactctgacgacgactcagatcgcgacatg
gaggtttcaccggcttcgaacaagggtgcctccactctagataatgttgatgagtggaaa
tggaaactaagtatgcttctccgcaatggaagcgagcaagaggtggtatcgcgggagaga
aaggacaggcgtgattatgagcagctttctgcactagctgaaagaatgggtttatatagc
cgccaatatggaaaggtggttgttttcagcaagatacctttgccaaactaccgatcagat
cttgatgataaaagacctcagagggaggtctctattcctaatggtttgcaaagagaagtg
gatcatttgcttggagaataccttgctcggaagcgaacaaatcgagggagctttcccaat
attgccttttcaaggtcaagtagcactgacagcttcaccactgatgaaggtctctccgag
caacaggaccctcctacaagtgttgtcatggagaaaattctgaggcgaagaagtttacaa
ttgcgtaatcaacaacaggcttggcaggaatctccagaaggacaaaaaatgcttgaattt
cggagaagtcttcctgcttataaagaaagagaagcactgttagcagccatatctcaaaat
caggttgttgttatttcaggtgaaacgggttgtggtaagaccacgcagcttcctcaatac
attttagaatccaagatagatgctgcttgtggagcaacctgtagtatcatttgtactcaa
ccaagacgaatctctgctatatctgtatctgaaagagttgcagctgaaagaggggagaag
ttgggtgaatctgttggttataaggttcgactagaaggcatgaaagggagggacactcgc
ctacttttctgcacaacaggaattttgctgaggagattactggttgatagaaacttgaaa
ggtgtgacccatgtcatcgtagatgagattcatgaacgtggcatgaatgaggattttctt
ctgatagtcttgaaagaccttcttccccgtcgtccggaacttaggttgatcttaatgagt
gcaacattgaatgctgagcttttctcttcttactttggtggggctccaatgatacacatc
cctggattcacatacccagtgcgaactcattttctggagaatgttctggaaattactggg
catagattgactccgtacaatcaaattgatgactatggacaagagaagatgtggaaaatg
caaaagcaagcattgaggaagaggaagagcccaattgcttctgtggtggaagatgcacta
gaagctgctgattttagggagtatagtcccagaacccgtgactcactatcttgttggaat
cctgactctattggctttaacctcatagagagtgttttgtgtcatatttctcgaaaagaa
aggcctggtgcagttttagtgtttatgactgggtgggatgacattaattctttgaaagat
cagcttcaagctaatccccttcttggagatcctaccaaggttctgcttcttgcatgccat
ggttctatgccaaccgcagagcagaggttaatatttgaaaagcccaatgatggtgtgagg
aagatagttctcgcgactaatatggctgagacaagtatcacaattaatgatgtggtgttt
gttgtggactgtggaaaggcaaaagagacatcatatgatgcattaaataataccccttgt
ttgcttccaacatggatctctaaagcttctgctcgccaaagaagaggaagagctggtcgt
gttcagccgggggagtgttaccatctttatcccagatgtgtatatgatgcatttgctgat
taccaattaccagaactattaaggacacctttacaatctctttgtttgcaaataaaaagc
ctacggcttggaagcatctctgagtttttatcaagggctttacagtcaccagaaccatta
tcggtgaaaaatgccattgagtatctgaaaattattggggcattagatgagaaggaagag
ttaactgttctaggacgccacttgtcaatgctgccagtggagccaaagctgggaaagatg
cttattttaggggccatattcaactgtcttgatcctatattgactgccgttgctggtctt
agtgtcagagatccatttttaactccatttgataaaaaagatctagctgaatctgcaaaa
tctcaattttcttgccgagactacagtgatcatcttgcattagttcgtgcctacgaagga
tggaaggatgctgaaagagagcattctggatatgaatactgctggaagaattttctttct
gcgcaaacattaaaggctattgattctcttaggaagcaatttctttttctgcttaaggat
accggtttggtcgatgagaatttcagcacatgcaataagtggagtcgtgatgagaacctt
gtccgggcggtagtatgtgctggcttgtatcctggagtctgctcagttgtgaacaaggag
aaatcgatatctttgaagacaatggaggatggtcaggtcatgctttactcaaattcagtc
aatggaagggaggctaagattccatatccatggttagtttttaacgaaaaggtgaaggtt
aattcagtattcctacgagactcaacagcagtgcccgattctgtgttgctgctttttgga
gggaacatctcacgagggggacttgatggacacttgaaaatgttaggtggctacttggaa
tttttcatgaaacctgatttggcatcaacatacttacacctcaagagagagcttgaagag
ctaattcagaacaagcttctaaatcctagaatggacatccagaccagcgaagaactccta
tcagccattcggttacttgttacagaggatccatgcagtggccggtttgtatttggtcgt
caggagctcaaacctaagaagtcaaaatccttgcttccaacaaactctggaggtgggggt
gataacccgaagagccaacttcagacgctcctaactagagctgggcatgacaacccaact
tataaaacaaagcagctgaagaaccaccagttcagatctatggtcgagttcaatggcatg
caatttgttgggcagccatgcggcagtaagaagctagcagagaaggacgcggcatctgag
gcgctggagtggttaaatggtggggcctcatcaggttcccgtgacattgatcacatgtcc
atgctgcttaaaaagagcaagaagaagcatcacagaaggacataa
DBGET
integrated database retrieval system
