Elaeis guineensis (African oil palm): 105049097
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Entry
105049097 CDS
T03921
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105049097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105049097
03019 Messenger RNA biogenesis [BR:
egu03019
]
105049097
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105049097
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105049097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
105049097
NCBI-ProteinID:
XP_010926956
UniProt:
A0A6I9RIS7
LinkDB
All DBs
Position
7:9768758..9801073
Genome browser
AA seq
686 aa
AA seq
DB search
MDDADGALSFDFEGGLDAGAPAHASSAPASLMPSDPTVAAANAGTAAAPGPGDPVAGGGP
GRRTFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNED
IKECNMYKLGFCPNGPDCRYRHAKLLGPPPPVEEVLQKIQHLSSFNYGSSNRFFQHRNTG
YNQQAEKAQFVQGSAVSNQNAAVRPPPSVEPPNVQQPQSQIQQSQQQPPQPTTENPVQNI
SNGLLNQATRTASPLPQGQSRYFIVKSCNRENLEISVQQGVWATQKSNEAKLNEAFESSE
NVILIFSINRTRHFQGCAKMTSKIGGYIGGGNWKYAHGTAHYGRNFSVKWLKLCELSFNK
THHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELMAMLIAAESKREEEKAK
GVSTDDATDNPDIVLFEDNEEEEEEESEEEDESSGQGSQGRGRGRGMMWQPHMPLVRGGR
PMLGVRGFHPVMMGADGFGYGDCFAAPDLFGIPPRVFAPFGGPRFSGDFSATGPMSGLVF
PGRPPQPGAVFPMGGLGMMMGPGRAPFMGGMPMGGAGRASRPMGVSPFLHPPPPPPPPNS
RPAKRDQRRPASDRSDRHEPVLDQVNKVQEMMGPSNGADGDMGYHRGAKVQSEDKFVSGD
NFQNDDSESEGEAAPRRSRHGEGKRK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgctgatggagccctcagcttcgacttcgagggcggcctcgacgccggcgcc
cccgctcacgcctcctcggcgccggcatccctgatgccgtccgaccccactgtcgctgcg
gcgaatgcggggaccgcggcggcccctggccccggcgatcccgtggccggcggcggcccc
ggcaggcggaccttccggcagacggtgtgccgccactggctccgcagcctctgcatgaag
ggcgatgcctgcggcttcctccaccagtatgacaagtctcggatgccggtctgccgattc
ttccgcctctacggcgagtgccgcgagcaggattgtgtctataagcacaccaacgaggac
atcaaggagtgcaacatgtacaaattgggtttttgcccaaatggccctgattgtcggtat
agacatgcaaagctgcttggacctccaccccctgttgaagaggtccttcagaagattcaa
catctgagttctttcaattatggctcttcaaatagattttttcagcataggaacactggt
tataaccaacaagcagaaaaggctcaatttgtacaaggttctgcagtatctaatcaaaat
gcagcagtgagaccaccgccttcggttgaaccacccaacgtacagcagccacaatctcaa
atccagcagtcacagcaacagccaccacagccaactactgagaacccagtgcagaatatt
tcaaatggcttgttgaaccaagccactagaactgcttctccactccctcaagggcaatct
aggtattttattgttaaaagttgcaaccgggaaaatctggaaatttccgttcagcagggt
gtttgggcaactcaaaagagtaatgaggcaaaacttaatgaagcttttgaatcctctgag
aatgttattttgatattctcaatcaacagaactagacatttccagggttgcgcaaagatg
acgtctaagataggtggatatattggcggaggaaattggaaatatgctcatggaactgca
cattacggacgaaatttttcagtcaaatggttaaagctatgtgagttgtccttcaataaa
actcatcatctcaggaatccttacaatgacaacttaccagtgaagataagccgagactgc
caagagttggagccttttattggtgaacagctggcttctctgctttatcttgagccagat
agtgaactcatggcaatgctgatagctgcagagtccaaacgtgaggaggaaaaagcaaag
ggggttagtacagatgatgcaactgataatccagatattgtcctgtttgaggacaatgaa
gaagaggaggaggaagaaagtgaggaagaggatgagagcagtggccagggtagccaagga
agaggtaggggaagaggaatgatgtggcagccgcacatgccactggtgcgtggagggagg
ccaatgcttggggtccggggtttccatcctgtcatgatgggtgctgatggatttggttac
ggcgattgctttgctgcacctgatctttttggcattcctccccgtgtttttgcaccgttc
gggggtccaagattttctggtgacttctcagcgacgggtcccatgtctgggttggttttc
cctggtaggccgccccagcctggtgctgtttttccaatgggtggccttgggatgatgatg
ggcccaggtcgggcaccattcatgggtggcatgcccatgggaggtgctggccgggccagt
cgtccgatgggggtgtctcctttcctccatccgcctccacctccacctccacccaacagc
aggcctgcaaagagggatcaaaggagaccagcaagtgataggagtgacagacatgagcca
gtattagatcaggtcaacaaggttcaggaaatgatgggacctagcaatggagcagatggt
gatatggggtaccatcgtggtgctaaggtccagtctgaggataaatttgtttctggagac
aatttccagaatgatgatagtgagagtgaaggtgaggcagcaccaagacgttcaagacat
ggtgagggaaagaggaagtga
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integrated database retrieval system
