Elaeis guineensis (African oil palm): 105049145
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Entry
105049145 CDS
T03921
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03440
Homologous recombination
egu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105049145
03450 Non-homologous end-joining
105049145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
egu03032
]
105049145
03400 DNA repair and recombination proteins [BR:
egu03400
]
105049145
DNA replication proteins [BR:
egu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
105049145
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
105049145
BRCA1-C complex
105049145
NHEJ (non-homologous end-joining)
MRX complex
105049145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
105049145
NCBI-ProteinID:
XP_010927015
UniProt:
A0A6I9RIW9
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Position
7:12407784..12459548
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDDSNWPLQDSSTLKKKFDDI
FSATRYTKALEAIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRDNIAQDQEKAEFLKT
QIKELERDIQGVEGKILHTETTLKESRKLQDQISTTTTARSTLFKLQQTQYAALAEENED
TDEELKEWQTKFEERIAILETKISKLEREMNDEETKSSLLSQTINDSTREIGKLQAEADA
HMAVRQERDSTIQSIFTKHNLGSLPDAPFSNEVAFNLSNRIKTRLFDLEKDLQDKKKSND
MELKLLWEHYVALNSRCSEIEGQKQAKIASKAGIVKRMKEKENERDLAEHELSSLNLSHI
DEREKNLQVEVERKTLALGERDYESTISQKRTEIFSLEQRIKALYREKDVLASDSEDRVK
LDLKKEEMESCKRKEKKIMDEYKDRIRAVLKGRVPSNKDLKKEIAHALGSLKKEYDDLNS
KTLEAEKDVKLVQMKIQDTKSHLSKLQKDMDAKRRFLESKFHSLILMSSDIESFPQVLLE
ALEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERPFSPEEEDEFVKKQRVKSAS
SAEHMKLLAIESSNADAHFQQLDKLRMIYEEYIKLGKETIPLAEKSLEELMEDLKQKTQA
FDDLVGVLAHVKAEKDSVEVLAQPVETVDRLLQEMDNLKPQIEELEYKLDSRGQGVKSVE
EIQLQLNALQSKRDSLNSEVENLREEQRFLSDDLSNMQMRWHALREEKLKASSILHKVKK
ADEDLALLAEEKAQVDFDGKHLAEALVPLLKEKEKLQQEHTDLKLKLELEYDEQAEKKRI
FQQEIEMLLSLNTRIKEYLNSKKVERLKDLQEKHSLAESQLQKCESMKREISAELNKSKE
LLRNQDQLKRNIDDNLNYRKTKAEVDELTHEIESLEEKVLSIGSMSTIEAELKRHMQEKE
RLLSELNRCHGTLSVYQSNISKNKLELKQAQYNDIDKRYFNQLVQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVTKDEHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggacaagatgctgatcaaaggcatccggagcttcgatccggagaacaag
aacgtcatcacctttttcaggcctctcaccctcatcgtcggccccaacggcgccggcaaa
accaccatcatcgaatgcctgaagctctcctgcaccggcgagcttccccccaactcccgc
tccggtcacagcttcatccacgaccccaaggtggcgggggagacggagaccaaagggcag
atcaaacttcggttcaagacggctgctgggaaggatgttgtgtgcattcgatccttccag
ctcacccagaaggcctccaagatggagttcaaggccatcgagagcgtcctccagaccatc
aacccccacactggagagaaggtctgcctcagctacaggtgtgcggacatggatagggaa
atcccagctctgatgggcgtgtcgaaggccatcttggagaatgtcatatttgtccaccag
gatgactccaattggccactgcaggattcttcaacacttaaaaagaaatttgatgacatc
ttctctgccactcgctacacgaaagctttagaagccatcaaaaaactgcacaaggatcaa
gcacaggaaataaagacttacaagctgaagctagagaatcttcaaactctaaaagatgct
gcctataagcttcgtgataatattgctcaagatcaagagaaagctgagttcttgaaaact
caaataaaggagctggagagggatatccaaggtgtggagggtaagatcctgcatacagaa
actactctgaaggaatcgcggaagcttcaggatcagatttcaaccactactactgcaaga
agcactttatttaagcttcagcagacacagtatgctgctcttgctgaggaaaatgaagat
actgatgaggaattgaaagaatggcaaacaaaatttgaagaaaggattgcaatattagag
actaaaattagtaaattagagagagagatgaatgatgaagagaccaaaagttccttgctc
tcacagacaatcaatgattctacacgtgagattgggaaacttcaagctgaagctgatgct
cacatggccgtaaggcaggagcgtgattcaaccatccaaagtatttttacaaagcataat
cttggatctcttcctgatgcccctttcagcaacgaggtggctttcaacctctcaaataga
ataaagacaaggttgtttgatcttgaaaaggacctacaggataagaagaaatcgaatgat
atggaactcaagcttctatgggagcattatgttgcattaaattctcgttgcagtgaaatt
gaaggtcagaagcaggctaagattgcgtctaaggcagggattgtaaagcgcatgaaagag
aaagagaatgagcgagatcttgcagaacatgaactgtcaagccttaatctgtctcatata
gatgagcgggagaaaaacctgcaagtcgaggttgagaggaagacacttgcactaggagaa
agagattatgagtcaaccataagccagaaacgaactgaaatatttagcttggagcaaaga
attaaagctctttatcgtgagaaagatgtcttagctagtgattctgaggatagagtcaaa
ttggatttgaaaaaagaagaaatggaaagctgcaagaggaaagagaagaaaataatggat
gaatacaaggacagaattagagctgtgctaaaagggagggttccttctaataaggatctc
aagaaggagattgctcatgccttagggtctctaaagaaagagtatgatgacctgaactcc
aaaactcttgaagcagaaaaagatgtgaaattggtacagatgaagatacaagatactaaa
agccacctgtccaagcttcaaaaagatatggatgcaaagagaagatttcttgagtccaaa
tttcattctttgatactgatgtcttctgacattgaatcatttcctcaagttcttttagag
gctttggagaaaagagatgtacagaaaagcaaatacaacattgcagatggaatgaggcag
atgtttgatccatttgaaagagttgcacgtgcacatcatatatgtccttgttgtgagcgc
cctttctcccctgaagaagaggatgagtttgttaagaagcaaagagtgaaaagtgcaagt
tctgcagagcatatgaaattacttgccattgagtcttcaaatgctgatgcacatttccag
cagttggacaagctccgcatgatttatgaggaatatattaaacttggaaaggaaaccata
cctttagcagaaaaaagtttggaagaactaatggaagacctcaaacagaaaactcaggca
tttgatgatcttgttggggttctggctcatgtgaaggcagagaaggattctgtggaagtt
ttagcacagccagtggaaactgttgatagacttttgcaggaaatggataatttgaaaccg
cagattgaagaattggagtacaagctcgattctcgagggcaaggtgttaaatctgttgag
gaaattcagttacagctgaatgctttgcagagcaagagggattcattgaacagtgaggta
gagaatctgagggaagaacaaagatttctaagtgatgatttatcaaatatgcagatgcgg
tggcatgctcttagggaggagaagttaaaagcatcaagtatattgcataaagtcaaaaaa
gcagatgaggatctagctcttctagctgaggaaaaagctcaagtggacttcgatgggaag
catttagcagaggcacttgtacccttactgaaggagaaagagaagttacagcaagagcac
acagatttgaaattgaaacttgagctagaatatgatgagcaggcagaaaagaaacggatc
tttcaacaagaaattgagatgcttttgtcactcaatactcggattaaagagtatctaaat
tccaagaaagtagaaaggttgaaggatttacaagaaaagcactcgttagctgaatctcaa
ctgcagaaatgtgaaagcatgaaacgggagatttcagctgaattgaacaagagtaaagag
ctattgcgtaaccaagatcaattaaaaaggaatattgatgacaacttgaattacagaaaa
acaaaggctgaagtagatgaacttactcatgaaattgagtcactagaggagaaagtttta
tctattggaagcatgtccaccattgaagcagaacttaagagacatatgcaagaaaaggag
aggcttctttcggagctgaatagatgccatgggacactttcagtttatcaaagtaatata
tcaaaaaacaaacttgaactcaaacaggcacaatacaatgacatagacaagagatacttc
aatcagcttgtccaacttaagacaactgaaatggcaaataaggatctggatcgctactac
aatgcacttgataaggcattaatgcggttccatactatgaaaatggaggaaataaataag
ataatcagggaactatggcagcaaacatacagaggacaagatattgattacataagtatt
cactctgattctgagggtgctgggactcgatcatacagctacaaagtcctaatgcagact
ggcgatgctgagctggaaatgcggggaagatgtagtgctggtcagaaggttcttgcttca
cttataatacggttggcgctagcagaaactttttgtctgaattgtggaatcctagcactg
gatgaaccgacgaccaacttggatgggccaaatgcagaaagtcttgctgcagctctctta
agaataatggaagaccgcaagggtcaggagaattttcagttgatagtaattactcatgat
gagagatttgctcagctgattggtcaacgccagcatgccgaaagatattaccgggtcaca
aaggatgaacatcaacacagcatcattgaagctcaagagatatttgattga
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