Elaeis guineensis (African oil palm): 105049277
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Entry
105049277 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105049277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105049277
03041 Spliceosome [BR:
egu03041
]
105049277
03009 Ribosome biogenesis [BR:
egu03009
]
105049277
03016 Transfer RNA biogenesis [BR:
egu03016
]
105049277
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105049277
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105049277
Spliceosome [BR:
egu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105049277
Complex C
U4/U6.U5 tri-SnRNP related factors
105049277
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105049277
Transfer RNA biogenesis [BR:
egu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105049277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105049277
NCBI-ProteinID:
XP_010927179
UniProt:
A0A6I9RJ61
LinkDB
All DBs
Position
7:complement(1277261..1290620)
Genome browser
AA seq
1002 aa
AA seq
DB search
MEETLIPGKRKVPEQDSEDKAVFTNEAAEPESVPKRRNLSRSCIHEVAVPNGYASSKDES
IHGTLSNPEYNGKMAKTYPFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMS
FRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLAPNASCLVMTTEILRGMLYR
GSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICN
LHKQPCHVVYTDYRPTPLQHYVFPMGGLGLYLVVNENEQFKEENFMKMQETFTKQKSQAD
GNRSGGAKASVRIAKGGTASTGSDIYKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL
DFNSQEEKDAVEQVFRNAVLCLNEEDRTLPAIELMLPLLQRGIAVHHSGLLPMIKELVEL
LFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGK
DERGICIIMIDEKMEMNVLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKN
SFHQFQYEKALPDMGLRISKLEKEAAMLDSSGEAELAEYHKLGLDIAQLEKRIMSEITRP
ERVLLYLVPGRLVKVRDGGTDWGWGVVVNVVKKPPAASSTLPSSLASSRGSSYIVDTLLH
CSPGLSENGSRPKPCPPRPGEKGEMHVVPVPLPLISGLSSIRIAIPSDLRPPEARQTVLL
AVQELGKRYPQGLPKLHPVKDMGIKDPELVDLVXQVEEVEQKLYSHPLHKSGQSEQQFQW
YQRKAEVNHEIQQLKSKMRESQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAACLID
TGDELLVTELMFNGTFNDLDHHQVAALASCFIPCDKSNEQIHLRNELAKPLQQLQDSARR
IAEIQRECKLDINVDEYVESTVRPYLMDVIYCWSKGASFAEVIEMTDIFEGSIIRLARRL
DEFLNQLRAAAHAVGEVDLEKKFEAGSESLRRGIMFANSLYL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaactttgattcctggcaagcggaaagtgcctgagcaagattcagaggacaaa
gctgtattcaccaatgaggctgcagagcctgaatctgttccaaaaagaagaaatctttcc
cgctcatgcatccatgaggttgctgttcctaatggatatgcttcttccaaagatgaatca
atccatggaaccctgtccaatccagaatataatggcaagatggccaaaacctacccgttt
gaattagaccccttccagcgtgtatcggtggcatgcttggaaaggaatgaatctgtctta
gtatcagcacacacttcagcggggaagactgcagttgctgagtatgctattgcaatgtca
tttagagacaagcagagagtcatttacacctcacctttgaaggctctgagcaatcagaag
tacagagagctcagtcaggagttctctgatgttggcctgatgactggtgatgtcacactt
gcaccaaatgccagctgcttagtcatgacgacagaaatcctcagaggaatgctttacagg
ggttctgaggtgataaaagaagtggcttgggttatctttgatgaaattcactatatgaag
gatcgggagaggggagttgtatgggaagagagtataatattcttgccccctgcaattaag
atggtttttctctctgctaccatgtcaaatgccacagagtttgctgagtggatatgtaat
ctacacaagcagccctgtcatgtggtgtatacagactacagacccacaccattgcaacat
tatgtgtttcccatgggtgggttgggtttgtaccttgttgtgaatgagaacgaacagttt
aaagaggagaattttatgaagatgcaggaaacattcacaaagcaaaagagtcaggcagat
gggaataggagtggtggtgccaaagctagtgttaggattgcaaagggtgggactgcttcc
acaggttctgacatctacaaaattgtaaagatgattatggaacgaaaatttcaaccagtg
attgttttcagctttagtagaagagagtgtgagcaacatgccatgtccatgtcaaagctt
gacttcaattcccaggaagaaaaagatgctgttgaacaggttttccgaaatgctgtgctg
tgcttgaatgaagaagatagaacattgcctgctatagagttgatgttgcctcttcttcaa
agaggcattgcagtgcaccattctggactacttccgatgatcaaggaattggtggagctt
ctgttccaggaaggcctcgtaaaagcactttttgctactgaaacatttgcgatgggtttg
aacatgccagcaaaaacagttgttttcacatctgttaagaaatgggatggtgatagccat
cggtatattggctctggagaatatatccagatgagtggaagagctggacgtcgtggcaaa
gatgaacgtggcatctgtattataatgattgatgagaagatggaaatgaatgttcttaag
gacatggttttaggtaaacctgctccattggtcagtactttcagactaagctattattca
attttgaatctgatgagccgtgctgagggccagtttactgctgaacatgtgatcaaaaat
tcattccaccaatttcagtatgagaaggcactaccagatatggggctaaggatctcaaag
ttggagaaagaggctgctatgctcgattcttctggagaggcggaacttgctgaatatcac
aagctgggacttgatatagctcaattagaaaagaggattatgtctgagatcaccagacct
gaacgagttctgctatatttggtccctggtaggctggttaaagtgcgagatggtggaaca
gattggggttggggagtggtggtaaatgtggtaaaaaagcctccagcagcatcaagtaca
ttgccttcttcattggcctcttctcgcggtagcagttacattgtggatactctgctgcac
tgctcgcctggtttaagtgaaaatggttcacgtcccaagccgtgcccacctcgtcccgga
gaaaagggcgaaatgcatgtggttcctgtaccattgcccctaatttctggtctcagcagt
ataagaattgcaataccttctgatctccgaccaccagaagcaagacaaactgtactcctt
gcagtgcaagagttgggaaagcgttatccccaaggacttccaaaacttcatccggttaaa
gatatgggtattaaagacccagagcttgttgacttggttngtcaagttgaagaagtcgag
caaaaattatattctcatccattgcataagtctggtcaaagtgagcagcagttccaatgg
tatcagagaaaagcagaagtgaatcatgaaatccaacagttgaagtcgaagatgcgggag
tcacagttgcaaaaatttcgtgatgaactgaaaaatcgttcgcgtgttctgaagatgctc
ggtcatattgatgctgatggggtattgcaattaaaaggacgtgcagcctgtttaatagat
acaggggacgaacttcttgtcactgagctgatgtttaatggtacatttaatgatcttgat
catcatcaagttgctgctcttgcgagctgctttatcccttgtgacaaatcaaatgaacaa
atacatctgagaaatgagcttgcgaagcctttacagcagcttcaggacagtgcaagaagg
attgccgagatacaacgtgaatgcaaattggacataaatgtggatgaatatgtggaatca
actgttagaccatacctgatggatgtgatttattgttggtcaaagggggcatcatttgct
gaggtaatcgaaatgactgatatttttgaaggtagcatcatacgccttgcaaggaggctg
gatgaatttttgaatcagttgcgtgctgctgctcatgctgttggagaggttgatctggag
aagaagtttgaagccggtagtgagagccttcgacgaggtataatgttcgccaattccctg
tacttgtga
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