Elaeis guineensis (African oil palm): 105049340
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Entry
105049340 CDS
T03921
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105049340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105049340
Spliceosome [BR:
egu03041
]
Complex B
Other components
Prp19-related factors
105049340
Complex C
105049340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH_4
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
105049340
NCBI-ProteinID:
XP_073116544
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All DBs
Position
7:3221082..3235819
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AA seq
488 aa
AA seq
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MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLDYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYARGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYVGGLDARIT
EQDLRDHFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGMRLKLMWGR
PQASKPEGEVPDDEAARQGLMAHGGMLPRAVISQQQSNQQPQPPGTQDQQQPPLHYFNIP
APPPAERTFYPSMDPQRMGAVVPSQESSDGKGGSDKQPAQQQGLLRAPNSSGQAFPVLPP
HLQGQYPQYYAPFGYMAPPYQQQYPPYQSMMAPPPPPPAPPAVQQYPPEILLPGNQKELS
TVRAKIPV
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggttgcttagagacgcgcaggccgacggatgggagcgctccgacttcccc
atcatctgcgaatcgtgcctcggtgacaacccctatgttcgaatgacaagggcagattat
gacaaggagtgtaagatctgcacacggccatttacagtcttcaggtggagaccgggacgt
gatgcaagatacaaaaagacagagatctgccagacatgctgtaagctgaaaaatgtgtgc
caggtctgcctcctggatcttgactatgggttgcctgttcaggttcgggacactgccttg
tcgatcaattccaatgatgcaatcccaaagagcgacgtgaatagggagtactttgcagaa
gagcatgaccgcagggctagagctggcattgattatgagtcttcatatggaaaggtgcgt
ccaaatgacaccattttaaagcttcaaaggacaacaccgtattacaaaaggaatcgcgca
catgtctgtagcttttatgcgcgtggtgaatgcacacgtggtgctgaatgtccgtatcgg
catgagatgcctgttactggggagttatcccagcagaacataaaagatcggtattatgga
gtgaatgacccagtcgctctgaagctcttaagcaaggcaggtgagatgccatctctgact
cccccagatgatgagagcattaggacactgtacgttgggggccttgatgcccgaatcacc
gagcaggatctgagggatcacttctatgcccatggtgagattgagtcgatcaggatggtg
ctccaaagagcttgtgcctttgtgacgtacacaacaagagaaggagcagagaaggctgca
gaggagctagccaacaagcttgttattaaaggaatgcgtctgaagctgatgtggggaagg
ccacaggcctccaaaccagagggcgaggtaccagatgatgaggctgcaaggcaagggctc
atggcacatggagggatgcttccaagggctgttatatcccagcaacaaagcaaccagcag
cctcaaccaccaggcacacaggaccaacagcagccaccactgcactacttcaacattcca
gcgccacccccagcggaacgaaccttctacccctcgatggatcctcagagaatgggtgct
gtagtaccgtcccaggaatctagtgatggcaaagggggttcagacaagcagccagcacag
cagcagggactgctgcgagcaccaaatagctcagggcaagcattccctgttttgccgcca
catcttcagggccagtacccacagtattatgcaccatttgggtacatggccccaccatat
cagcagcagtatcctccttaccagtcaatgatggctccacccccacctccgcctgcacct
cctgcagtgcagcagtaccctccagagatattgttgccaggcaatcagaaggagctttcc
accgtgagagcaaaaattcctgtttga
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