KEGG   Elaeis guineensis (African oil palm): 105050240
Entry
105050240         CDS       T03921                                 
Name
(RefSeq) sm-like protein LSM7 isoform X1
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03018  RNA degradation
egu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105050240
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105050240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egu03019]
    105050240
   03041 Spliceosome [BR:egu03041]
    105050240
Messenger RNA biogenesis [BR:egu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105050240
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105050240
Spliceosome [BR:egu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105050240
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 105050240
NCBI-ProteinID: XP_019707754
UniProt: A0A6J0PL92
LinkDB
Position
8:15261730..15267987
AA seq 111 aa
MLFSSRCFYHLFQSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAI
EFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPEGA
NT seq 336 nt   +upstreamnt  +downstreamnt
atgctgttctcatcaagatgcttttatcatctattccagtcaggccggaaggagacagtt
ttagatttggcaaagtttgttgacaagggtgtccaggtcaagctaactggtgggagacaa
gtaacaggaactttgaagggatacgatcagctgctaaacttggttcttgatgaagcaata
gagttccttagagatcctgatgatccactgaaaactaccgaccaaaccaggcgtcttggc
ctaatagtttgtaggggaactgcggtaatgcttgtatcaccaactgatggaactgatgag
attgccaacccctttatccagccagagggggcctaa

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