Elaeis guineensis (African oil palm): 105050366
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Entry
105050366 CDS
T03921
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03022
Basal transcription factors
egu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105050366
09124 Replication and repair
03420 Nucleotide excision repair
105050366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105050366
03400 DNA repair and recombination proteins [BR:
egu03400
]
105050366
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105050366
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105050366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SAB
Motif
Other DBs
NCBI-GeneID:
105050366
NCBI-ProteinID:
XP_010928645
UniProt:
A0A6I9RM86
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Position
8:complement(9371483..9396481)
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AA seq
607 aa
AA seq
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MAVINMAAKYKTMVKEPGIPGVLKMSEEKFIFIPNDPRSAMKLNVDFRSIKGHKFSKDGS
KQALLNLTQDSEKGGGYIFEFDNFSNRNVCRDFVGKVLGKFQALMSSKQNEQPVPEKPAA
AIHGEQLSTTEMEHRMKLLREDSELQKLHKQFVIGGVLTESEFWATRKSLLDDDAQRTSK
QQAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHRAFLNFVPSKMTEKDF
WTKYCRAEYLHRTKNSVAAAAEAANDEELAVFLKNDDILANEARRKIRRVDPTLDMEADL
GDDYIHLPDHGLPQDGSKETADAENDIARRTLSQDLNRHAAVVLEGRALDVELGDTRTVA
EALARSKRAVSFAETSDEKTNQERLKRVSRMTEIEDLQAPYSLPYAPLCIKDPREYFDLQ
QANALKAFGDTDAGTKPIDCSLSTEEAYVHLMEQISEMKVRGLNNPVVQPEAALKVLNGL
NQYLSSTKYHLGKNPQESVLDRLPNRTKDELMHHWTSIQELLRHFWSSYPITTAYLYNKV
LRLKDAMAQIYHKLQETKESVQSDFRHQVSRLVQPMLQALDAAFAHYDTEQQKRYNKSGN
KPNGFVQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatcaacatggcggcgaagtataaaacgatggtcaaggagcctgggattcca
ggagtgctcaagatgtctgaggaaaaatttatattcattccaaacgatcctagatcagca
atgaagcttaatgtggattttagaagtattaaaggtcacaagttcagcaaagatggttcc
aaacaagcattgttgaatcttacacaagattctgagaagggtggaggctacatatttgag
tttgacaatttttctaaccgcaatgtttgccgagattttgtaggaaaagttctagggaag
tttcaggctttgatgtcctctaaacaaaatgagcaaccagtgcctgaaaaacctgctgct
gcaattcatggtgaacaacttagcaccacagagatggagcaccgaatgaaattgttgaga
gaggatagtgaattgcagaaactgcacaagcaatttgtcattggtggtgtgttaacagaa
tctgagttttgggcaacaaggaagagtttacttgatgatgatgctcagagaacatcaaag
caacaagcaggattcaaaagtgctatgctcgcagatgttaggccactgactgacggtcgg
accaacaaagtcacctttagccttaccccagagattattcaccagatttttgctgaaaag
cctgctgttcatcgggcatttctgaatttcgtcccaagcaaaatgacagaaaaggatttc
tggacaaaatactgtcgagcggaataccttcacaggacaaaaaattctgtagctgctgca
gcagaagcagccaatgatgaggaacttgctgtatttctaaagaatgatgacatattggcc
aatgaagcccgccgtaagattagacgggttgatccaacattagatatggaagctgattta
ggggatgactacatccatcttcctgatcatggacttcctcaggatggtagtaaggagact
gctgatgctgagaatgacatagctaggaggaccctctcacaggatcttaatcggcatgca
gctgttgttcttgaaggaagggcattagatgtggagttgggagacacacggacggtagct
gaagcacttgcaaggtccaaacgggcggtgtcgtttgctgaaacctcagatgagaagaca
aaccaagaacgattgaagagggtttctcgaatgactgagattgaggatctccaggctcct
tatagcctcccatatgcaccactctgcatcaaggatccacgggagtactttgatttgcaa
caagccaatgctctcaaagctttcggagatactgatgctggaaccaaacccattgattgc
agcctaagcactgaggaggcatacgttcatttgatggagcagatttctgagatgaaagtc
cgagggttgaataatccagttgttcaacctgaagcagctctcaaggttcttaatgggttg
aatcagtatctttcgagtactaaatatcatcttggaaagaaccctcaggagagtgtcctg
gataggctgccaaacaggactaaagatgaacttatgcatcactggacatccattcaggag
ttgctacgacatttctggtcatcatatcctattacaactgcctacctctataacaaggtt
ttaagattgaaggatgctatggcacagatctatcataagctacaggagacaaaggaatct
gttcagtcagatttccggcatcaagtttctcgcctagttcagcccatgctccaggccttg
gatgctgcctttgctcactatgacacggaacagcagaagcggtataataaaagcggcaat
aaaccaaatggatttgtccaataa
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