Elaeis guineensis (African oil palm): 105050554
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Entry
105050554 CDS
T03921
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105050554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105050554
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105050554
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105050554
mRNA degradation factors
3'-5' decay
Ski complex
105050554
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
105050554
NCBI-ProteinID:
XP_010928930
UniProt:
A0A6I9RMS5
LinkDB
All DBs
Position
10:complement(81281704..81334332)
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AA seq
1371 aa
AA seq
DB search
MDRITAANEVAFRIGFSGHSGHLRLEPLPPVESSNPLRSLPDFILPPAFPAETSESLKDI
LEEKYLLPELDPHEFSVENSGRQWVFDWFDSAKVHLEPSAPRSVVAPSWELPFRRSKKTG
STGLWDPSSVQIDVTELIGGPQDSGTLGRMPGPAKDFVRGSMNNRPFRPGGLDDSQALER
ALPEGACNGEWVREVINGGVAQAVPPSFKKGLELGCLKEFPYHWKYTNEQLSAAQIATEE
NLNRYSVQFDDLFKKAWEENVIEESRSDESSETRVETKESDAIDTVPEAETRESDVIDAI
PVAEGEETEGINAIPKAETSLDEILLTDPGGTTAKLSGASNDGRQKEGEVWALVGGSEEI
VNHFYELVPDMAISFPFELDRFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKH
CTRAVYTAPIKTISNQKYRDLCGKFDVGLLTGDVSIKPEASCLIMTTEILRSMLYKGADI
IRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHVNIVLLSATVPNTMEFADWIGRTKQK
KIRVTGTIKRPVPLEHCLFYSGELYKICEGDAFLPQGLRAAKDAYKRKSSSIVGGKSGTK
LGAPTSVGATQVRQHDNSGRDKIQKHFKHQVVDNLSGTSGGHQNSWGSRRSESSLWLLLI
NKLSKKSLLPVVIFCFSKNRCDKSADNMTGMDLTSNSEKSGIRVFCDKAFSRLKGSDKNL
PQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVF
DALRKFDGKEFRKLLPGEYIQMAGRAGRRGLDKIGTVIVMCRDEIPEESDLKHVMVGKPT
RLESQFRLTYTMILHLLRVEQLKVEDMLKRSFAEFHAQKNLPEKERLLLQKLRQTTKSIE
CIKGEPAIEEYYAMASEAESHREHIAQATMQSHSALQFLSPGRVVVVKSQSAEDHLLGVV
LKTPSATNKQYIVLVLVTDFASSTHTPSVSSNKLQEKESGNFQQGYFIAPKGKRGMDEEY
FSSISSRKGSGVINIKLPYCGSAAGMSYEVIAMENKDFMSICDCKIKIDQVRLLEDPSQI
AYSKTVQQLLEQKPRGSKYPPALDAVKDLKLKDMDLVERYHACNRLLQRMAENKCHGCIK
LKENMMLMKEQKRHKEEVNALQYQMSDEALQQMPDFQGRIDVLKEISCIDSDLVVQLKGR
VACEMNSGEELICTECLFENQLDDLEPEEAVAIMSALVFQQNKTSEPSLTPKLANAKQRL
YDTAIRLGKLQEQFKVAIDPQEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIV
RTIVRLDETCREFKNAASIMGNSALHKKMEAASNAIKRDIVFAASLYVTGV
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatcacggcggccaacgaggtcgccttcagaattgggttctctggtcacagc
ggacacctcagactcgaacctctcccacccgtcgagagctccaaccccctgcgatctctc
cccgacttcatcctcccgccagcattcccggcagaaacatcagaaagtttgaaagatatt
ctagaagagaagtaccttctgccggaattggatccacatgagttctcggtggaaaattcc
ggaaggcaatgggtattcgattggtttgatagcgcgaaggttcacctggagccttcggct
cctcgttctgttgtagcgccctcgtgggaattgccctttaggcggtccaagaaaacaggc
tctacggggttatgggatccgagctcagtgcagatagatgtgacagagctgattggagga
ccccaggattccggaaccttgggacgcatgcctggaccagcaaaggattttgtcagaggc
agtatgaacaatcgcccgttccgcccgggaggtcttgatgattctcaggcattggagagg
gcccttcccgagggtgcttgcaatggtgaatgggtacgtgaagttatcaatggtggtgtg
gctcaagctgttcctcctagtttcaaaaaagggttggaattaggttgtcttaaggaattt
ccttaccattggaaatataccaatgagcaattatctgcagcccagattgcaacagaggaa
aacctgaatagatactcggtgcaatttgatgatttattcaagaaagcttgggaagaaaat
gttattgaagaatcaagaagtgatgagtcttcagagacaagagttgaaacaaaggagagt
gatgccatcgacacggtccctgaagctgaaacaagggagagtgatgtcattgatgctatt
cctgtagctgaaggagaggagactgaaggtatcaatgctattcccaaagctgaaacttct
ttagatgagatattattgactgatccaggagggacaacagcaaagctaagtggagcaagc
aatgatggtaggcagaaagaaggagaggtctgggctcttgttggtgggagtgaggagatt
gtaaatcacttttatgaacttgtccctgatatggcgattagctttccttttgagctggat
agattccaaaaggaggctatatattatctcgagaagggagactctgtttttgtagcagca
catacttcagctggaaagacagttgttgcagaatatgcatttgctttagcatcaaagcat
tgcacacgggctgtctacactgctcccattaaaaccataagcaaccagaagtacagggat
ctttgtggcaagtttgatgtaggtcttcttactggagatgtaagcataaagccagaggca
tcttgccttatcatgactactgagatattaaggtcaatgctttacaagggagctgatatt
attcgtgacattgaatgggttatatttgatgaagtacattatgtaaatgatgttgaaaga
ggtgttgtatgggaagaagttataatcatgcttccaagacatgtcaacattgtcctcctt
tcagcaacggtcccaaacacaatggagtttgcagattggattggtcgtacaaaacagaaa
aagatccgtgttactgggaccataaagagaccagttcctcttgagcactgcttgttctat
tctggagagttgtacaaaatatgtgagggagatgcctttttgcctcagggactgagagca
gctaaagatgcctataagaggaaaagttctagtattgttggaggcaaatctggaacaaaa
ttgggggctccaacatctgtaggcgcaactcaagtaaggcaacatgataattctggtcga
gataaaattcaaaaacacttcaaacatcaagtggttgacaatctttcggggactagtgga
ggtcaccaaaacagttggggatcaaggagatcagagtcatcattatggttgttgctgata
aacaagctttcaaagaagtcccttttgcctgttgttatattctgcttctcaaagaatcga
tgcgataaatcagcagataacatgactggaatggaccttacaagtaattctgagaaaagt
ggaattcgtgtcttttgtgataaggctttttcacgcctaaagggatctgacaagaaccta
ccacaggttgttagagtgcaaaacctattacgtagaggtattggtgtgcaccatgctgga
cttcttcctattgtaaaggaagttgttgaaatgctcttttgtcgaggtgtgattaaggtg
ttattctccactgaaacgtttgcaatgggagttaatgcccctgcaagaacagttgtcttt
gatgcattgagaaagtttgatggcaaggaattcagaaagttgcttcctggggaatatatt
caaatggccggacgtgctggcaggagaggattggataagattggtacagttattgttatg
tgtcgtgatgaaattccggaggagagtgacttgaagcacgtgatggttggaaaaccgact
agacttgaatctcagtttagattgacttataccatgattttgcatctccttcgtgttgaa
caattaaaggtagaagacatgctgaagagaagttttgctgagtttcatgctcaaaagaac
ttgccagaaaaagaaagacttcttttgcaaaagctacgtcaaactactaaaagtattgaa
tgcataaagggtgaacctgctattgaagaatattatgcgatggcatcagaagctgagtca
cacagagaacatatagcacaggcaaccatgcagtcgcactctgctctacagtttctttca
cctggaagagtggtggttgtcaaatcacagtcagctgaagatcacttgctcggagttgtc
ctgaaaacgccttctgctacaaacaaacaatatatagttttagtattggtgactgatttt
gcttcatctacacacactccatcagtttcttcaaataaactgcaagagaaagaaagtggc
aattttcaacaaggttattttattgctcctaaaggaaaacgtggcatggatgaagagtac
ttctcatccattagttctcgtaaaggatctggtgtaataaatataaagttgccatattgt
ggtagtgctgctgggatgagctatgaagttatagcaatggaaaataaggactttatgagc
atctgtgactgcaaaataaagattgatcaagtgcgtcttcttgaggatcccagccagatt
gcttactcaaaaactgttcaacagctgctagaacagaaacccagaggaagtaaatatcct
cctgcactggacgcggtaaaagatctcaagctgaaagacatggatcttgtggagaggtac
catgcgtgtaacagactactgcagcggatggctgaaaacaaatgccatggatgcataaaa
ttgaaggagaacatgatgctgatgaaggagcaaaagaggcacaaagaggaagtaaacgct
ttacagtatcaaatgtctgatgaagcacttcagcagatgccagattttcagggtcggatt
gatgtgttgaaggagatcagttgtattgattctgatcttgttgttcaactcaagggccgc
gtggcctgtgaaatgaactctggggaggagttgatatgtactgagtgtttgtttgagaac
caattggatgacttagaacctgaagaagctgtggccattatgtctgccctagttttccag
cagaacaaaacctccgaaccatctcttactcctaagctggctaatgcaaaacagagattg
tatgacacagcaattagattgggaaagcttcaggagcagttcaaagttgctatagatcct
caggagtatgcacgagacaatctcaagtttggccttgttgaagttgtctatgaatgggca
aagggaactccttttgcagatatttgtgagcttactgatgtaccggaaggtctgattgtg
aggaccatagtaagattggatgaaacatgccgtgaattcaaaaatgcagcttcaataatg
ggcaactcagcacttcataaaaaaatggaggctgcatctaatgccatcaagcgtgacatt
gtttttgcagctagtttgtatgtcacaggagtttga
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