Elaeis guineensis (African oil palm): 105051241
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Entry
105051241 CDS
T03921
Name
(RefSeq) uncharacterized protein isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105051241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
egu03000
]
105051241
03019 Messenger RNA biogenesis [BR:
egu03019
]
105051241
04121 Ubiquitin system [BR:
egu04121
]
105051241
Enzymes [BR:
egu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105051241
Transcription factors [BR:
egu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105051241
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105051241
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105051241
Ubiquitin system [BR:
egu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105051241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
DUF7028
PcfJ
Rtf2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
105051241
NCBI-ProteinID:
XP_073100293
LinkDB
All DBs
Position
10:complement(57308752..57326818)
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AA seq
1055 aa
AA seq
DB search
MATMSDDGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKEETDGRCPACR
TPYDKERIVGMAANCERVVAEINAEKKQKSQKAKNKASTEARKHLSSVRVIQRNLVYIIG
LPSNLCDESMLERREYFGQYGKVLKVSISRPAGAVAQQASNNSTFSVYITYAREEEAVRC
IQAVHNFVLEGKSLRACFGTTKYCHAWLRNMTCSNPDCLYLHDIGSQEDSFTKDEIISAY
TRSRVPQIASNNSRRSGNVLPPPADDFSSSGMVTSKHTVKSVSNVYAHNTPSHAKGSPPN
SSGKPTVLPAAASWGLRSSNCRTLAISVACSQTPVKQKVETLHSTSLLPSMTESTKQSSV
WHDDVVRTSKMPERRHVMPTNGTSRPLEPSKPGSGKDCLTVMSSESLRDADSASVPSAWN
DDVITSKISEPLKSVNDKECWTSRSDLSPDDALDVAPTSQNPISCLSRLLSPAAEDKGRG
VIFAGSSTKSMNNLSKGADRLSSSTDKAAKGSMIVNGNVESLCLGLSSTSIENHLGLGES
SMDQHQTSKSNLSSRPQQCQPEHGVEHLSSEPLSRASSVPDAHISNELLDWDLEPQEQGF
MSTGIEREDDAKNQPSCSPYLNHRHISANQSSYSSWNNGVGIKHQLYTGDSRTVETKVDL
TSLLSRENESALCNGHKEDDQSSFSNRGKVFESPRMNCSEEMGKTDEVANSDKIASVDMG
ESTIISGILSLDFDPWDDSSSANNFAKLLGETERQDGLFKLSSSWRSQNSNQSRFSFARQ
ESEASGLEASLGDTVNEQKLGSSLQDSFGDGFQSGLQFSNFEGSNAVSSNLVITSDRVVG
VSRAKISAPPGFLAPSRAPPPGFSSQDRFNQAYDTTYSDNHLVGSPSLGNQHEAHLPGNP
DDVEFIDPAILAVGKGRMPLGVHNSGLSSKSSFPSQFSTSSSDPRLQLLMQQSISSYHIG
DRFLPLNDPYITSRLSSQNHGSLFPFTQMSHQQPRSAHISNGQWGGRNDVRNGWEMGMPD
ILRNERFGLNFYSGNEERKFQIASSADLYNRAFGL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatgagtgacgatggagaaaggacgtgcccactgtgtgctgaggagatggac
ctgacagaccagcagctgaagccatgcaggtgcggatacgagatttgtgtttggtgttgg
catcatattatggacatggctgagaaggaagaaacagatgggcgatgtccagcatgcagg
acaccatatgacaaggaaagaattgttggaatggctgccaattgtgaaagggtggtggct
gagattaatgctgagaagaaacaaaaatctcaaaaggcaaagaataaagcatcaacagaa
gctaggaagcatcttagcagtgttagagtgatacaacggaaccttgtgtatataattgga
ctaccttctaatttatgtgatgaaagtatgctcgagcgcagggaatactttggccagtat
gggaaagttttaaaagtatcaatttctcgcccagccggtgccgtggcccagcaagcatca
aataacagcacatttagtgtgtacataacatatgctagggaagaggaagcagttcgttgt
attcaagctgtgcacaattttgttttggaaggtaaatctttaagagcttgctttggtact
acaaagtattgccatgcttggttgagaaatatgacttgcagtaatccagattgtctatat
ttgcatgacatcggtagccaagaggatagtttcactaaagatgagataatttctgcttat
acaaggagtagggtaccacagattgcttcaaataattcacgacgctcggggaatgtgttg
cctcctccagcagatgatttctctagcagtgggatggttacaagcaaacacacggtcaag
agtgtctcaaatgtatatgctcataatactccaagccatgcgaaaggttctcctcctaat
agtagtggaaagcctactgttttaccagctgctgcttcatggggacttcgcagttcaaat
tgccggactctggccataagtgtagcatgctcacaaacccctgttaaacagaaagtagaa
acactacatagcacatccttgcttccttcaatgactgaaagcacaaaacagtcttcagta
tggcatgatgatgtagttagaacatcaaagatgccagaaagaaggcatgtaatgcccacg
aatggcacatctagacccttagaaccatcaaaacctggttcagggaaggactgcctaaca
gtgatgtcatcagagtctcttagagatgcagattctgcttctgtaccttctgcatggaac
gatgatgtgattacatctaagatatcagagcctttaaaatcggttaatgacaaggagtgc
tggacatctagatcagacctgtcacctgatgatgcattggatgtagctcctacttcacaa
aatcctatcagttgcttatctagacttctatcccctgcagctgaagacaaggggagaggc
gtcatttttgctgggagcagcacaaaatcaatgaacaacctgtccaaaggtgccgatagg
ctatcttctagtactgataaagctgctaaaggtagtatgattgtgaatggaaatgtagag
agtttatgcttgggtttgtcttcaacgagtattgagaaccatcttgggcttggtgagtca
agcatggaccaacatcagacttcaaaatctaatttgtcttcaagacctcaacaatgtcaa
cctgaacatggggttgaacatttatcttcagagccactgagtagagcctcctcagtacct
gatgcacatatttcaaatgaattacttgattgggatctggagccgcaggagcaaggcttt
atgtctacaggaattgagagggaagatgatgccaaaaatcagccatcatgttcaccttat
ctaaatcatcgtcacattagtgcaaatcaatctagttatagttcttggaataatggtgtt
ggaatcaagcaccaattgtatactggtgatagtagaactgtggagaccaaggtagacttg
acctcgcttctatcaagagaaaatgaatctgcattatgcaatggacacaaagaggatgac
caaagcagtttttctaaccgtgggaaggtttttgagagtcccaggatgaactgctctgaa
gaaatgggaaaaactgatgaggtagctaattctgacaaaatagctagtgtcgatatggga
gagagcaccatcatttcaggtatattgtcgctagattttgatccatgggatgactcatcc
tcggcaaacaattttgctaagctgcttggtgaaactgaaaggcaagatggtttgtttaaa
ttatcgagttcatggagatcacagaatagcaatcaatccaggttctcatttgcaaggcaa
gaaagtgaagcaagcggtctagaggcttctcttggagacactgttaatgaacagaaatta
ggttcatctttgcaggattcttttggagatggtttccagagtgggctccaattcagtaat
tttgagggttccaatgctgtctctagcaatctagttattacctctgacagagttgttggt
gtttcaagggctaaaatatcagctccacctggatttttggcaccaagtagagctccccct
ccaggcttttcttcccaggatagattcaaccaggcttatgatacaacatactctgataat
catcttgtgggtagtccttcacttggaaatcagcatgaagcacatctacctggaaatcca
gatgatgtggaattcattgatccagcaatacttgctgtgggcaaagggcgaatgccactt
ggagttcacaattcagggttgagttcaaaatcttcttttccttcacagtttagcacttca
agtagtgatccaaggcttcagctattgatgcagcaatccatctcttcttatcatattggg
gatagatttttacctttaaatgatccttatattacgtctcggctttcatcgcaaaaccat
ggaagtctatttccatttacgcagatgtcacaccagcagcccagaagcgcacacatttca
aatggccaatggggtggtaggaatgatgtaagaaatggttgggaaatgggcatgcctgat
atcttgaggaatgagaggtttgggcttaatttctattctggcaacgaggaacgtaagttt
caaatagcgagctcagctgatctgtataacagagcatttggattgtaa
DBGET
integrated database retrieval system
