Elaeis guineensis (African oil palm): 105051288
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Entry
105051288 CDS
T03921
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105051288
03015 mRNA surveillance pathway
105051288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105051288
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105051288
mRNA cycle factors
P-body specific factors
105051288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105051288
NCBI-ProteinID:
XP_010929941
UniProt:
A0A6I9RNM7
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Position
9:23340993..23387771
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AA seq
1204 aa
AA seq
DB search
MVQPTKGEMEHQEDECRIVGEHHGKQDDEESAARLEEYKKSIDVKLSLRHGNLNPERPDS
GFLRTLDSSIKRNTAVIKKLKQINDEQREGLMDELRSVNLSKFVSEAVAAICDAKLRTSD
IQAAVQVCSLLHQRYKDFSPCLIQGLLKVFFPGKCGDDLDADKNMRAIKKRSTLKLLMEL
YFVGVVEDASIFVNIIKDLTSLEHLKDRDATQTNLSLLTSFARQGRYFLGLQLHQPGQEV
HDEFFKGLNVTADQKKFFKKALHSYYDAVAELLQSEHNSLRMLELENAKILNAKGELSDE
NTTSYEKLRKSYDHLFRGVSSLAEALDMQPPVMPDDGHTTRLTTGVDVSSSASGKESSVL
EPVWDDEDTRAFYESLPDLRAFVPAVLLGEAEPKSNEQHPKTAERQSESAVELDMEVQDI
AEGCGDSEPLPEGKTEEKGKDKEDKEKEKLKDSEKEKLKEDTEKKGEGEKDKVKGLDGTS
LDGLLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVAT
LSTCMKDVPTMLLSMLEEEFNFLINKKDQTNIETKIKNIRFIGELCKFKIAPAGLVFSCL
KACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEIMMRLKNVKNLDPRHSTLV
ENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSTVEHVLRQLRKLPWAECEPYIL
KCFLKVHKGKYNHVHLIALLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRLA
HMRFLGELYNYEHIDSSVIFETLYLIIIFGHGTPEQDVLDPPEDCFRIRMIITLLQTCGH
YFDRGSSKRKLDRFLIYFQRYVLSKGPIPLDIEFDIQDMFADLRPNMTRYSSIEEVNAAL
IEHEEHERMASIEKASSEKHSDSESQKGPSQTTNIKANGSSVANRMEENGRGHEEPPDSE
SYSDSGSVDQEGHEDEEDLLYEDKSDDRSEGDGDDEDDGGPIGSDEEDSVQVRQKLVEVD
PKEEEEFDRELRALMQESLESRKLELRARPTLNMMIPMNVFEGSKDSRTIEGESGEETID
EEGGSGGGNNKVRVKVLVKKGNKQQTKQMYIPQDCSLVQSTKQKEAAELEEKQSIKRRIL
EYNEREEEESNGISSQAGNWMQVGSSGGSSRPVGRGNWDGAGRTGSRQRHHSSGGFYHGY
GRRR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggttcagcctaccaaaggagaaatggagcatcaagaagatgagtgccggattgttggt
gaacatcatggtaaacaagatgatgaggaaagtgctgcacgtcttgaggaatataagaaa
tcaattgatgtgaaactttctctccgtcatggcaatctgaatcctgagaggcctgactct
ggttttctcaggacattggactccagtattaagcgcaatacagcagttattaaaaagctt
aaacagataaatgatgagcaacgagaagggttgatggatgagttaagaagtgtcaactta
agcaaatttgtcagtgaagctgtggcagctatttgtgatgccaagctcagaacttcagat
atacaagctgctgtgcaggtctgctcattgcttcatcagagatacaaagacttctctcct
tgccttattcagggtctcttgaaagttttctttccaggaaaatgtggtgatgatttagat
gcagataaaaacatgagggcaataaagaagaggagcactctaaaacttctaatggaactt
tattttgttggagttgttgaggatgccagcattttcgtaaatattattaaggatcttact
agcttggagcatttaaaggatcgggatgcaactcagacaaatttgtcccttcttacaagt
tttgctcgacaaggcagatatttcttagggctccagctccatcagcctggacaagaagtt
catgatgagttctttaagggcctcaatgtcactgcagatcaaaagaagttcttcaagaaa
gcattgcactcatattatgatgctgtagctgaactacttcagtctgagcataattctctt
cgaatgctggaacttgagaatgcaaagatcttaaatgctaaaggggagctcagcgatgag
aatacaacttcatatgagaagcttaggaagtcttatgatcacttatttcgtggtgtctcc
tctttagctgaggcccttgatatgcaacctccagtaatgccagatgatgggcacactact
aggttaaccacaggtgtagatgtgtcatcttcggcttctggtaaggagtcttctgtgctt
gaacctgtgtgggatgatgaagatacaagggcattttatgaatccttacctgatcttaga
gcttttgttcctgctgtattattgggagaagcagaaccaaagtctaatgagcaacatcca
aagacagcagaacggcaaagtgaatctgctgtggagctggacatggaagtgcaagatatt
gctgagggctgtggagactcagaacctttaccagagggaaaaacagaggaaaaaggtaag
gataaagaggacaaagaaaaggaaaagttgaaagattctgaaaaagaaaaattgaaagag
gacacagaaaaaaagggggaaggtgaaaaagataaagttaaaggccttgatggcacaagc
ttggatggtctgttacagaggcttccaggttgtgtgagccgtgatcttattgatcagttg
acggtagaattttgctacttgaattcaaaggcaaatcgtaagaaacttgtcagggctttg
ttcaatgtccctagaacttccttagaattactgccttactattctcgaatggtagcaaca
ttgtcgacatgtatgaaagatgttccaactatgcttttgtcaatgttggaagaagagttc
aactttttgataaataaaaaggatcaaacaaacattgaaacaaagataaagaacatcagg
tttatcggagagctttgcaaatttaaaattgcacctgcaggccttgtttttagttgcttg
aaggcctgcttagatgacttcactcaccataacatagatgttgcgtgcaatcttcttgag
acatgtggccgttttctgtatcgatctccagaaacaacaatacgtatggcaaacatgttg
gaaataatgatgcgtttaaagaatgtcaaaaatttggatccacgtcatagtacgctggta
gaaaatgcttactacttgtgcaaaccacctgaacgatctgctagagtttctaaagtacgc
cctccattacatcagtatatcaggaaattgcttttctcagatctcgataagtcaactgtt
gagcatgttcttaggcagttgcgcaagttaccttgggcagaatgtgaaccatatatctta
aagtgctttttgaaggtccacaaggggaagtacaatcatgttcatctgattgctttgcta
actgcaggcctcagtcgctatcatgatgaatttgcagtagcagtagtggatgaggttttg
gaggagattaggcttgggttagaattgaatgattatgggatgcagcagcggcgccttgct
cacatgcgattcttaggagagctatacaactatgagcatattgattcatctgtaattttt
gaaacattatacttgattatcattttcggccatggaacaccagaacaagatgtactggat
ccaccagaagactgcttccggatcaggatgataataacacttcttcagacatgtggtcac
tattttgatcgaggttcttcaaagaggaagcttgatagatttttgatatattttcagaga
tatgtccttagcaaaggtccaataccactagatattgagtttgacattcaggatatgttt
gctgatttacgaccaaacatgactcgatactcatccatcgaggaagttaatgcagcactg
attgaacatgaagaacatgaacgcatggcctcaatcgagaaggccagcagtgagaaacac
tctgatagtgaatcccagaaaggtccatcccaaacaactaacatcaaagccaatggcagc
agtgtagcaaacagaatggaggaaaatggcaggggccatgaggaaccgccagacagtgaa
agctattcagatagtggcagcgttgatcaggaaggccatgaagatgaggaagatctgttg
tatgaggacaaatcagatgacagatctgaaggggatggtgatgatgaagatgatggggga
cccattggttctgatgaagaagacagtgtccaggtcaggcagaagttggtggaagttgat
ccgaaggaggaagaggaatttgaccgggagctgagagccctgatgcaggagagtttggag
tctcgcaaattagagctacgggcaaggcccactctgaacatgatgataccaatgaatgtt
tttgagggttctaaagattcgaggaccattgagggggagagtggggaggagacgatagat
gaggagggtggcagcggtggaggtaacaacaaggtgagagtgaaggtgcttgttaagaag
gggaacaagcagcagacgaagcagatgtatatccctcaggactgctctcttgtgcagagc
acaaagcagaaagaggctgcagagctggaggagaagcagagcattaagcggaggatcctg
gagtacaatgagagggaagaggaggaatcaaatgggatttcatcccaggccggaaactgg
atgcaagttgggagcagtggtggtagcagtaggccggtgggtcgtggcaattgggatggt
gcaggaaggacaggatcacggcagcggcatcattcatctggtgggttttatcatgggtat
ggcaggaggagatga
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integrated database retrieval system
