Elaeis guineensis (African oil palm): 105051820
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Entry
105051820 CDS
T03921
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105051820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egu03021
]
105051820
03036 Chromosome and associated proteins [BR:
egu03036
]
105051820
Transcription machinery [BR:
egu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105051820
Chromosome and associated proteins [BR:
egu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105051820
PBAF complex
105051820
GBAF(ncBAF) complex
105051820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DUF7685
Motif
Other DBs
NCBI-GeneID:
105051820
NCBI-ProteinID:
XP_073099738
LinkDB
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Position
9:7771470..7780821
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AA seq
790 aa
AA seq
DB search
MYPASPSLPSSDSRFKWRKRKRCSNPKRLKPHDNGEDDDDDDEDEAATREVAEEDEDHDS
QANNPSSDPVLDLREAEVLPDTGQRISDFPAVLRRFVNRPHSSVLDLVAAELSLSSSFSA
SAGSRPWAAPLLENISHGQLQALSTVLPDNPSLLQPPDLDKPSAYVCTPLPHMEGKGVVK
WLGREQHMVLPMHADWFSPMTVHRLERQVVPHFFSGKSSDHTPERYMTLRNKIVFKYWEN
PGKRLSFVDCQRLVANKELYDLSRIVRFLDHSGIINYLATSSMHRGLRMAGSLLNEESTG
ELQLKTGPLRSIDSLVLFDRPKCSLRVEDFALLSSSSSSASLDSDSGLSDLDNRIRVRLW
EHACNYCSRPLPNLHYQSQKEADVMLCSDCFHDAKFVTGHSSLDFLRVDSKKDTPDLDGD
SWTDQETLLLLEALEKYHDNWNEIAEHVGTKSKAQCILHFVCLPMEHGLLENIELSHMSV
ESDSLKGHEPGLPHETGLPCSDSICDTTELNSGDQIPFADSANPVMSLVAFLTSAIGPRV
AAACASAALSVLTKEATRLSSESMHSELGAHGAHANFGRQKDESPEDPVPYAKKKAPSPF
SSERVKLAAKGGLSAAAVKAKLFGDQEEREIQRLAAIIINHQLKRLEWKLKQFAEVETIL
LKECEQVERARQRLLMERVRMMSTQFAQAGTTLPAAAAAGMNTTAAQPTIPASAGQANVS
SEFGKNLPGHPQMSFMQRPQPSGFGLRSTLPAILPSPSASSPNVMFSSGMPNTSNHHLLR
SSSGNNSNIG
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtaccctgcctccccctctctcccctcctcagattcgcgcttcaaatggcgtaagagg
aagcgatgcagtaatcccaagcgcctgaagccccacgacaacggcgaggacgacgacgac
gacgacgaagacgaggccgctacaagggaggtggcagaagaggatgaagaccatgactcc
caggccaacaatccgtcctccgaccccgtcctcgacctccgtgaggccgaagttctcccc
gacaccggccaacgcatctctgacttccccgccgtcctccgccggttcgtcaatcgcccc
cactcctccgtcctcgacctcgtcgccgccgagctctccctctcctcctccttctctgct
tccgccggctcgaggccttgggccgctccccttcttgaaaacatctcccacggccagctc
caggctctctccactgtcctcccggacaacccctcattgctccagccgcccgatctcgac
aagccctcggcctatgtctgcactccactgccacacatggaagggaagggcgtcgtgaag
tggcttgggagggagcaacacatggtcctccccatgcatgctgactggttctcgccaatg
acggtgcaccggctggagaggcaagtggtaccgcacttcttctcggggaagtcgagcgac
cacacgccagagaggtacatgacgctacggaacaagatagtgttcaagtactgggagaat
cctggaaagaggctatcttttgttgattgccagaggcttgttgccaacaaagagctttac
gatctgagccggattgtgcggttcctggatcattccggaatcattaattacctcgccacc
tcgtcaatgcatcgcgggctcagaatggctggttctcttctaaatgaggaaagtaccggg
gagcttcagctaaagactggacctctgagatccattgacagtctggtgttgtttgatagg
ccaaagtgtagtcttagggtggaggatttcgctttgctgtcatcttcgtcttcttctgca
tcactggattctgattctggactttctgatttggacaatagaatccgggtgcggctatgg
gaacatgcatgcaattactgctctcggcctctgcccaatttgcactatcagtcacagaag
gaggctgatgtaatgctttgctcagactgcttccatgatgcaaaatttgttactggtcac
tcaagtttagattttctgagagtggactccaagaaagatacacctgatcttgatggggat
agctggactgatcaggagacgttgctgctgctagaggccttggagaaatatcatgataac
tggaacgaaattgcagagcatgtgggcaccaagtcaaaagcacaatgtattcttcacttt
gtttgtcttccaatggagcatggtctactagaaaatattgagctatcacacatgtctgtt
gaatctgattctttgaaagggcatgagcctggattgccacatgagactggattgccatgt
tcagattctatttgtgataccacagaattaaattcaggcgaccagattccgtttgctgat
tctgcaaatccagttatgtcgctggttgcatttttgacctcggcaattggaccaagagtt
gctgcagcctgtgctagtgcagcattatctgtcttgactaaagaggccacaaggttgagt
tctgagagcatgcattctgaacttggtgctcatggagcacatgcaaactttggccgccaa
aaggatgaatctcctgaagatccggtgccatatgctaaaaaaaaggctccttctcctttt
tcttctgaacgtgtaaaactagctgccaagggtggtctgtctgcagcagcagtgaaggca
aaactatttggggatcaagaagagcgtgaaattcagagactggctgccattatcataaat
caccagttaaagaggttggagtggaagctgaaacagttcgcagaggtggaaaccattctg
ctgaaggaatgtgaacaggtggagagggcaagacagaggcttttgatggagcgtgttcgg
atgatgtcaacccagtttgcacaagcaggaactactctaccagctgcagctgctgctggt
atgaatacgaccgcagcacaaccaaccataccagcctcagctgggcaggcaaacgtctca
tcagaatttggcaagaatctgcccgggcatcctcagatgtcctttatgcaacgaccacag
ccatctggttttggactccgctcgactctcccagcaatcctcccatctccttctgcatcc
tctccaaatgttatgttcagttctggtatgccaaacacttcaaatcatcatttgttgaga
tcctcatcaggaaataattcaaatatcggttaa
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