Elaeis guineensis (African oil palm): 105052610
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Entry
105052610 CDS
T03921
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105052610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105052610
03009 Ribosome biogenesis [BR:
egu03009
]
105052610
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105052610
Spliceosome [BR:
egu03041
]
Complex A
U2 snRNP components
U2 related factors
105052610
Complex B
105052610
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105052610
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
90S particles
Helicases
105052610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
AAA_19
AAA_22
DEAD
AAA_30
Flavi_DEAD
nSTAND3
AAA_11
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
105052610
NCBI-ProteinID:
XP_010931770
UniProt:
A0A6I9RSJ3
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All DBs
Position
10:complement(16031499..16036048)
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AA seq
659 aa
AA seq
DB search
METPAEVNGSPLSRRCQKILERRRKLPVWTYREKFLDTLAKHQIVVVAAPPGSGKSTQIP
QFVVEAGYASNGKQIACTQPRRLVAMALSRRVAQEMNVTLGEKVGCSVQFEDFCSPKTVL
RYLTDGVLLRQALSDRLLEMYGVIILDEAHLRTLATDVLLAYFKKLLATNARPDLKLIIM
STQFEAKKFRDYFKGARIVQPCPSLNPVEINYTKDIVKDYVEAAIERVVEILVSESVGDV
IVFLTGVEEIETFCWRLGKAITDLGDKIGPVRVLPLHSTVSVDMQKKIFKAAPPPTRKGG
PVGRKVVVSTDIAESSLAIDGIVYVVDCGYAKQKVYNAQLRVESLLILPISRASAQQRAG
CARRSVSGKCFRLYSQKYFEAAQLKAFPEILRANLASTILQLKKLGIDDLLHLELMDPPP
AETITRAVETLKCFGALDEEGSLTELGKLMNEFPLDPQMSRMIVGSPQFQCSNEILSIAS
MLSVPNCFLRPVENQQVADKARANFSHINGDHLTLLNVYHAYKLHDGDSTWCENNFINQA
VLRSADRVRNQLATLMLKLNLKLCSPDFNSSDYYDNIRKGLLAGYFMQVAQLEHSGCYAI
VKDHHVVDLHPSSCLASRPAWVIYNDFVLGSRNFIRIITDVRREWLVDVAPHYYRIATI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggagacgccagcggaggtcaatgggtcgccgctgtcgcggcggtgccagaagatactg
gagaggaggcggaagctccccgtttggacctatcgagagaagttcctcgacaccctcgcc
aagcaccagatcgtcgtcgtcgccgcgccgccgggctccggcaagtccacgcagatccct
caatttgttgtcgaggcaggttatgcaagtaatgggaagcagattgcttgcacccaacct
cgtaggctagttgcaatggccctgtctcgtcgagtagctcaagagatgaatgtgactttg
ggagagaaagtcggttgttctgtgcagtttgaagacttctgcagtcccaaaactgttcta
aggtacctgacagatggtgtgcttctaagacaagcactgtctgatcggcttttagaaatg
tatggggtgataattcttgatgaggcacaccttaggaccttggctacagatgttcttctc
gcttattttaagaaactgctggcaacaaatgctcgacctgaccttaaacttattattatg
agtacacagtttgaggctaagaagttccgggattattttaagggtgcacggatcgtgcaa
ccatgtccgtcacttaatcctgtagagatcaattatacaaaggatatagtgaaggattat
gtagaggcagcaattgagagagttgtggagatacttgtgtctgaatcagttggtgacgta
attgtttttcttactggagtggaagagatagaaactttctgctggaggctaggaaaagca
attacagacttaggagataaaattgggcctgttagagtccttcctctccattccacagtg
tcagttgatatgcagaagaagattttcaaggctgctcctcctccgacaagaaagggtggt
cctgttggacggaaggttgtggtttcaacggacattgcagaatcatcattagcaattgat
ggcattgtttatgttgttgattgtgggtatgctaaacagaaagtttataatgcacaattg
cgtgttgagtccttactgattttgccaatatcaagggcaagtgcacaacagagagcagga
tgtgcaagaaggtcagtctctgggaaatgctttagactgtattcacagaagtattttgaa
gctgctcagttgaaagccttcccagagattctccgagcaaatcttgcaagcaccatcctt
cagttaaagaaactaggaattgatgatttgcttcatcttgagcttatggatcctcctcct
gcggaaacaatcacacgagctgttgaaactttgaaatgttttggtgctttggatgaggag
gggagcctgactgaactggggaagcttatgaatgagtttcctttggatcctcagatgtca
aggatgattgttggtagcccacaattccagtgctccaatgagattctctccattgcttcc
atgctatcagtaccaaattgcttcttacggcctgtggaaaaccagcaagttgctgataaa
gcgagagctaattttagccacatcaatggggatcacctcactcttttgaatgtctaccat
gcatataagctacatgatggagattctacctggtgtgaaaacaattttatcaatcaggca
gtgttgagatctgccgaccgtgtgaggaatcagcttgcaactctcatgctgaagctgaac
cttaagctttgctccccagactttaacagcagcgattattatgacaacataagaaagggc
cttctggcaggttattttatgcaggttgctcagctcgagcattcaggttgctatgcaatt
gttaaagatcatcatgttgtcgaccttcatccatcaagctgtcttgcttcaaggccagca
tgggtcatatacaatgattttgtcttaggcagtaggaatttcattcgtatcatcacagat
gttcgcagggagtggttggtggatgttgcaccgcattattaccgaatagcaaccatctga
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