Elaeis guineensis (African oil palm): 105052611
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Entry
105052611 CDS
T03921
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105052611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105052611
03009 Ribosome biogenesis [BR:
egu03009
]
105052611
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105052611
Spliceosome [BR:
egu03041
]
Complex A
U2 snRNP components
U2 related factors
105052611
Complex B
105052611
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105052611
Ribosome biogenesis [BR:
egu03009
]
Eukaryotic type
90S particles
Helicases
105052611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
SRP54
nSTAND3
ResIII
AAA_30
Flavi_DEAD
T2SSE
AAA_7
TsaE
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
105052611
NCBI-ProteinID:
XP_010931771
UniProt:
A0A6I9RTB1
LinkDB
All DBs
Position
10:complement(16023374..16029461)
Genome browser
AA seq
729 aa
AA seq
DB search
MSTERKRKVSLFDVVDENSVSAKLAKVNGSAPGLAAATPAVPPGINRWSGRPYSARYYEI
LEKRKTLPVWQQKDEFLQALKANQTLILVGETGSGKTTQIPQFVLEAEDLGKHSMVACTQ
PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSQKTILKYLTDGMLLREAMADPLLE
RYKVVILDEAHERTLATDVLFGLLKEVLRNRRDLKLVVMSATLEAEKFQGYFNGAPLMKV
PGRLFPVEIFYTQEPERDYLEAAIRTIVQIHMCEPPGDILVFLTGEEEIEDACRKITKEI
NNLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPAPLVEDGPPGRKIVVSTNIAETSLTIDG
IVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFSN
DLQAQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDEE
GNLTKLGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSISAMLSVPNCFLRPREAQKAADE
AKARFGHIDGDHLTILNVYHAYKQNNEDPSWCYENFINQRTLKAADNVRQQLARIMARFN
LKLCSTDFNSRDYYINIRKAMLSGYFMQVAHLERTGHYLTVKDNQEVHLHPSNCLDHKPE
WVIYNEYVLTSRNFIRTVTDIRGDWLIDVAPHYYDLSNFPSCEAKRVLERLYKKREKEKG
ESKTRNRAF
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagaggaagcggaaggtgagcctcttcgacgtggtggacgagaactctgtg
tcggcgaagctggccaaggtcaacggctccgcccccgggctggcagcagccacccccgcg
gtgccgccggggatcaaccggtggagcggcaggccctactcggcgagatactacgagatc
cttgagaagaggaagaccctcccagtgtggcagcagaaagacgagttcttgcaagcactt
aaggccaaccagaccctgatcctcgttggagagactggcagtggcaaaaccacccagatt
cctcaatttgttttggaagccgaggacttaggcaaacactcaatggttgcttgcacccaa
cctcgtagggttgctgcaatgtctgtttcccgtcgagttgccgaggagatggatgtaaca
ataggagaggaagttggttacagcattcggtttgaagattgtagtagccaaaaaactata
ctgaagtacttgactgatggtatgcttctcagagaggcaatggctgatccacttctagag
aggtataaagtggtgattcttgatgaggctcatgagcgaactttagcaacagatgttcta
tttggtcttctgaaagaggttttgaggaataggcgggatctgaaattagttgtaatgagt
gcgacacttgaggctgagaagtttcaggggtatttcaatggggcacctctaatgaaggta
cctggaagactgtttcctgtggagattttctatacacaggaaccagagagggattacctg
gaagctgccattcgaacaattgtgcagattcacatgtgtgaacctcccggcgacatactt
gttttccttactggagaggaagaaatagaagatgcatgtaggaaaattacaaaggaaatt
aataacttgggtgaccaagttggccctgtgaaagcagtgccattatattctactttgcct
ccagcaatgcagcagaagatttttgagcctgctccagccccgctggtggaagatggccct
cctggaaggaagattgtggtgtcaaccaacattgcagaaacatctctgaccatagatggt
atagtttatgtgattgatccgggcttctccaaacaaaaagtttacaatccaaggatacgt
gtggagtccttgctggtctctccaatatcaaaggcaagtgctcatcagaggtcaggacgt
gccggtagaactcaacctggaaaatgctttagactttatactgagaaaagcttcagtaat
gatctacaagcacagacatatccagagattcttcgttctaatctagcaaatacagttctt
acgttgaagaaacttggaattgatgatttggtacattttgactttatggatcctcctgct
cctgaaaccttgatgcgagccttggaggttctgaactatctgggtgccttggatgaggaa
gggaacttgaccaaattaggtgaaatcatgagtgagtttcccttggatcctcagatggca
aagatgcttattgtcagccccgagttcaattgttccaatgagatcctctcaatatctgca
atgctttcagtacccaattgctttctccggcctagggaagctcagaaagctgcagatgaa
gcaaaggctcggtttggtcacatcgatggggatcacctgacaattctgaacgtttatcat
gcttacaagcaaaacaacgaagacccttcatggtgttatgagaattttattaaccaaagg
acattaaaggctgctgacaatgtgagacaacagcttgcccgcatcatggccagattcaac
ctcaagctatgcagcacagatttcaacagccgtgattattacatcaacatcagaaaggct
atgctctcagggtacttcatgcaggtagctcatcttgagcgaactggacactacctgacg
gtgaaagataatcaggaggttcatctccacccctcgaactgcttggatcataaaccagag
tgggtcatctacaatgagtacgtcttgaccagtaggaacttcatccgcacagttacagat
attcgtggagattggttaatcgacgttgctccacactattacgatctcagcaattttcct
tcctgcgaggcaaaacgagttctagaaaggctgtacaaaaagcgtgagaaagagaagggt
gagagcaagaccagaaacagagccttttag
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