KEGG   Elaeis guineensis (African oil palm): 105053022
Entry
105053022         CDS       T03921                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105053022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egu03021]
    105053022
Enzymes [BR:egu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105053022
Transcription machinery [BR:egu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105053022
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 Spore-coat_CotD
Other DBs
NCBI-GeneID: 105053022
NCBI-ProteinID: XP_073100235
LinkDB
Position
10:complement(15420895..15467412)
AA seq 1708 aa
MEEHVPSPLISDGSVRGISFSAATIEEIRTCSINDCPVSHPSQLTNPFLGLPLEFGKCES
CGTAEPGKCEGHFGYIELPVPVYHPSHVSELRQILSLVCLKCMRMKGKVKHGNGKEKVTT
TSCLYCRDLPPISVKEVKTTDNALCLELRVSSRTRLRDGFWKFLDRFGFCYGDTYCRPLL
PYEALNILKEIPQETKKRLAAKGYFPQIGFILQYLPVPPNCLCVPEVSDGKSIMSSDISI
SLLKRVLNKIELIKRSRSGFPNFKSHEVESNDLQSSISQYMHLRGTPKVPQDITKKFAIG
TEANECSTKLWLEKMRTLFIRKGSGFSSRSVITGDAYIGVNVIGLPSEIAKRITFEERVT
VHNMKQLQEVVDKGLCVTYKDGFSTYAIAVGSKGHTYLKVGQVINRRIMDGDIVFINRPP
STHKHSLQAFYVYVHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLAAKAEVLELFSVE
KQLLSSHTGNLNLQLVHDTLLALKLMSNAAFLRKTTAEQLAMFVSPILPPPAIFKAHKSG
PFWTVHQILQNALPTFLDCFGERHLISNGEIIKLDLRRDAVQSLFTEIITSIFIMKGPKE
ALNFFNMLQPLLMEVLVMEGFSISLQDFYVPSAVIEKAQQSVQENSFILDQLRSKYNELV
ELQVENHLKSIKLPIVNFILNLTSLGNLIDSKSDSSIIKVVQQLGFLGLQLFDRGKLYSR
ALVEDCFTNFVNKYSTSGADHSCEAYGLVKNCFFHGLNPYEELVHAISSREVIVRSSRGL
TEPGTLFKNLMAILRDVIICYDGSVRNVCSNSIIQFEYGEDDGANSLNVSPAGEPVGVLA
ATAISNPAYKAVLESSQSNNSSWELMKEILLCKVTFKNVVTDRRVILYLNDCLCGKKFCK
ENAAIAVQNCLKRVTLKDCACDFSIEYQKEISLRDSSETTSGLVGHIHLDKMRLKLLNRS
PDEILRKCQDVIFGYGKKKGKLSHFFRRIILSLSECCSTRQPDVGNLSPFPCLQFSYRDQ
SATPDCESLEGAIHVMANTICPILLDTIIKGDPRVHEANIVWTGPDATSWVRNSCKTLKG
EVAIEVVVEKDAVRRNGDAWRTVIDACLPVIHLINTRRSIPYGIQQLQELLGISCAFDQT
VQRLSASITKVAKGVLKGHLILVANSMTCTGNLIGFNTAGYKALFRSLKVQVPFTEATLI
TPMKCFERAAEKCHTDSLVSVVSSCLWGKHXAIGTGSPFQILWNKQQMAENQNIGKGFYD
FLELVRTSSQREAGDGCSLDVDDLEVNENNEVCLSPEIGFEELTFDDGFDIDYNCKKDVS
MENGKVGNSSWEKISDSVAGSDRWQGWENRNQPEMDMSSGWQGWDNGKQPFTDQSNTSQG
WGNKKVTDGENSKPPTTRTSVWSSWDASDVQERSPASSPKSQLGHVASSSKSGIWGSQSS
SKVADLRSVDTTSNSSTQDGWNHVKESPAKPVWDTNVTRKSHGADNTWNTSAFSKSNVWD
SQSFDKVHNEGWDGGKWNENQVPDHKNQSWKSRSWNSSNXTDRRTQRNLSNKSVGTSDDR
KGWNSNSMMTSTRRRLDSFTVEEERILVEIEPTMQTIRRILRESSDGDRLSSDDQKFIIE
KVFQHHPDKQAKVADQIDHIMVDKHKDFQDSRCFYVVSCDGTSADFSYRKCMENFVKEIF
PEHAESFNRKYFRRRRPEPVNDSQQQQQ
NT seq 5127 nt   +upstreamnt  +downstreamnt
atggaggaacatgtaccatctcctcttatttcagatggctctgttcgtggtatcagtttt
agtgccgcaacgattgaggaaattcgtacgtgctccataaatgactgcccagtttctcat
ccaagccaactaacaaatcctttccttggtttgccattagaatttggcaaatgtgaatct
tgtggcactgctgaacccggaaaatgtgaaggtcattttggttacatcgagttgccagta
cctgtatatcatccttctcatgtcagcgaattgagacaaatcttgagtttagtgtgtttg
aagtgcatgaggatgaagggaaaggtcaaacatggcaatggaaaagaaaaggtcacaact
acatcatgtttatattgtcgggatcttccacccatatctgttaaagaagtaaagacaaca
gataatgctctttgcttggaactgagagtatcatcgaggacaaggctgcgagatggcttc
tggaagttcttggatcggtttggtttttgttatggagacacctattgtcgcccattgctt
ccatatgaggctcttaatattttgaaagagattccacaagaaaccaaaaaaaggcttgct
gcgaagggatattttcctcagattggttttattttgcaatatcttcctgttccgcccaat
tgcttatgtgtgccagaagtttcagatgggaaaagtatcatgtcctctgatatttctata
tccctgcttaaaagagttcttaacaagattgagctcatcaaaaggtcaaggtccggtttt
ccaaattttaagtcccatgaagttgagtctaatgacctgcagtcatctatttctcaatat
atgcatctcaggggcaccccaaaggtgcctcaagacatcaccaaaaagtttgcaattggc
actgaagcaaatgaatgttccacaaaactgtggcttgaaaagatgaggacgttgtttatc
agaaaggggtcaggtttctcttcccgcagtgtaatcactggagatgcatatataggtgtt
aacgtaattggtcttccatctgaaattgcaaagaggattacctttgaagaacgggtaaca
gtgcataacatgaaacagttgcaggaagtggttgataaaggactgtgtgtgacatacaaa
gatggtttctccacatatgcaattgctgtgggctcaaaagggcatacttatcttaaagtt
ggccaggttataaatcgtcggattatggatggtgatattgttttcattaataggccacct
agtacgcacaaacactccttacaagcattttatgtatatgtccatgatgatcacactgtc
aagatcaaccccctcatctgtgctccccttggagcagattttgatggtgattgtgttcat
atattttatccacagtcccttgctgcaaaggcagaagtcctagaattgtttagtgttgaa
aagcagttacttagttctcatactggaaacttaaacctgcaactggttcatgatacattg
ttggctttgaaactcatgtccaatgctgcattcttgagaaagacaacggcagaacagttg
gcaatgtttgtatctccgatcctgccaccacctgccatatttaaagctcataaatctggc
cctttctggactgttcatcaaatactgcagaatgctttgcctacttttctggactgtttt
ggagaacgacatctcataagtaatggcgaaataatcaagttagacttaagaagggatgca
gtgcagtcattgtttacagagataattacttctattttcatcatgaaaggtccaaaggag
gctttaaacttctttaatatgttacagcctttgttgatggaggtgctagttatggaagga
tttagtatcagtttacaagatttttatgttccaagtgcagttatagaaaaggcacaacaa
agtgttcaagaaaattcatttatacttgatcaattgagatcaaaatacaatgaacttgtg
gagctgcaagtcgagaaccaccttaaaagcatcaaactaccaattgtgaatttcattttg
aacttgacttcactgggtaatttgattgattcaaaaagtgattcgtctattatcaaagtt
gttcaacagcttggatttttgggccttcaactttttgaccgagggaagttgtactcgagg
gctttggtcgaggattgttttacaaactttgtaaacaaatattccaccagtggagctgat
cattcctgtgaggcatatggactggttaagaattgtttctttcatggcttgaatccatac
gaagagttggtccatgctatttcatccagagaagttatagttcgttcttcgagaggactg
acagaacctggaactttgtttaaaaacttaatggcaattcttcgggatgttattatctgc
tatgatggaagtgttagaaatgtctgcagtaattcaattattcagtttgagtatggagag
gatgatggagctaattccttgaatgtttcacctgctggtgaacctgttggtgtcttagct
gccactgcaatatcaaaccctgcatataaggcagtcctagaatcctcacaaagtaacaat
tcatcatgggaattgatgaaggagatattgctttgtaaagtcacttttaagaatgttgtt
actgatcgccgtgtgattttatatttaaacgattgcttgtgtgggaaaaagttttgcaag
gaaaatgcagcaattgctgttcaaaattgcttgaagagagtcactttgaaggattgtgca
tgtgacttctccattgaatatcaaaaggaaataagcttacgcgatagttcagaaactact
tcaggccttgttggtcatattcatcttgacaagatgcggttgaaattgttaaaccgaagt
cctgatgagattcttcggaagtgtcaagatgttatttttggctatggaaagaagaaagga
aagctctcccacttttttaggagaattattttatcacttagtgaatgttgcagcaccagg
cagccagatgtcgggaatttgtctccattcccgtgcttgcagttctcttaccgtgatcag
agtgccactccagattgtgagtctcttgagggagcaatacatgttatggcgaatacaata
tgtccaattttattggatacaattattaaaggtgatcctcgagtccatgaggctaatatt
gtttggactggaccagatgcaacctcttgggtgagaaattcatgcaaaacattgaagggt
gaggtagccattgaagttgttgttgaaaaagatgcagttcgacgaaatggtgatgcctgg
aggactgttatagatgcctgcttacctgtaatacaccttatcaacaccaggcgatctatt
ccttacggcattcaacaacttcaagaacttcttggcatttcttgtgcctttgatcaaaca
gttcagcggttgtcagcatcaattacgaaggttgcaaagggagtgctcaaaggtcacctt
attcttgttgcaaatagcatgacatgcactggaaaccttattggtttcaatactgctggc
tacaaggcgctttttcgttctttaaaagttcaagtaccgtttactgaggccacgttaatt
acaccgatgaagtgtttcgagagggctgctgagaagtgccacactgattcattagtcagt
gtggtctcgtcatgtttatggggtaaacatngtgccatcggcactggttcgcctttccag
attctttggaataaacagcagatggcagaaaatcaaaatattggaaaaggtttttacgat
tttcttgagttggtaaggacatccagtcaaagagaagcaggtgatggatgttcactggat
gttgatgatctagaggttaatgaaaataatgaggtctgtttatctcctgaaataggattt
gaggagctaacatttgatgatggatttgacattgattacaattgtaaaaaagatgtaagc
atggaaaatggaaaagttggtaactcaagctgggaaaagatttcagattcagtggctggt
tcagatagatggcaaggatgggaaaatagaaaccaacctgagatggacatgtccagtggc
tggcaaggatgggacaatggaaaacagccttttacagatcagtccaatacgtcacaaggg
tggggaaacaaaaaggtaactgatggagagaactccaaaccgccaacaaccagaacaagt
gtttggtctagttgggatgctagtgatgttcaagaaaggtcaccagcttcgagccctaaa
agccagcttgggcacgttgcttcatcttcgaagtcaggaatttggggcagtcagagttct
agtaaagttgctgatttgaggagcgtggataccacatctaacagtagtacccaagatgga
tggaaccatgtgaaagaatcaccagcaaagcctgtctgggatactaatgtaacaaggaaa
tcacacggggcagacaacacctggaatacaagtgcattttccaaatcaaatgtctgggat
agtcagagttttgacaaagttcataatgaaggttgggatggaggcaaatggaatgagaac
caagtacctgatcataaaaatcaatcatggaaatctcgtagttggaattcttcaaatngc
actgatcggagaacccagcgaaacctttctaacaagtcagtagggacatcagatgatcga
aaaggttggaattcaaattcaatgatgacttccacaagacgccgattagattcttttaca
gtggaggaggagaggattcttgttgaaattgaaccgacgatgcaaacaataagaaggatt
ttgcgtgaatccagcgatggtgatcgactatcttctgatgatcaaaaattcattatagag
aaagtttttcagcaccatcctgataagcaagcaaaagtggctgatcaaattgaccatatc
atggttgacaagcacaaggattttcaagattccaggtgtttttatgtggtatcttgtgat
ggcactagtgctgatttctcctatagaaagtgcatggagaattttgtgaaggaaatcttc
ccagagcatgcagagtccttcaacagaaagtacttcaggaggcgccgtcctgagcctgta
aatgacagtcagcagcagcagcaatag

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