Elaeis guineensis (African oil palm): 105053252
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Entry
105053252 CDS
T03921
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105053252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105053252
03012 Translation factors [BR:
egu03012
]
105053252
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105053252
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105053252
Translation factors [BR:
egu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105053252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
ABC_tran
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
105053252
NCBI-ProteinID:
XP_010932650
UniProt:
A0A6I9RVQ9
LinkDB
All DBs
Position
10:complement(1468620..1497732)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTRGLGLGLGLLLSFGRSLGAPGDRRFGALPFLLRRLIYYSGGDVNFRRWVDGQRGLCGY
AVEQFSDDEYECELDNQKPSSSVANIDEWRWKLSLLLRSTDRQEIVSRDKRDRRDYEQIS
NLAKGMGLYSEIYGKVVAASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDR
ILLTSSKVGDKLETNSAIKDIEDVSLDENQGSLVDGSVMEKVLQRKSWRMRNLQRTWQES
PEGMKMLRFRNSLPAYKEKERLLSAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG
AFCNIICTQPRRISAMAVAERVSAERGENLGETVGYKVRLEGMKGKNTHLLFCTSGILLR
RLLGDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNY
FGGAPMIHIPGFTYPVSSHFLEEILEKTGYKLTSFNQIDDYGQEKLWKTQRQLMPRKRRN
QIAALVEDAQRNSSFETYGSRVRDSLACWNPDCIGFNLIEAVLCHICRKERPGAVLVFMT
GWDDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKIVLATNMAE
ASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLY
PRCVYDAFPEYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAAMQPPEPLAVQNAVELLK
MIGALDEKENLTNLGRYLAVLPVDPKLGKMLIMGAVFRCFDPVLTIVSGLSVRDPFLLPQ
DKKDLAGTAKTRFAAKDYSDHMALVRAYEGWKDADREGSAYEYCWRNFLSVQTLQAIHSL
RKQFNFILKDAGLLDADPSTNNNLSHNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDD
GQVLLYANSVNAKYQTIPYPWLMFGEKVKVNTVFIRDSTGVSDSILILFGGILIKGDTAG
HLKMLDGYLDFFMDPSLAECYWNIKEELHKLIQKKLQDPNIDIHKEGKYLMLAAQELVTG
DLCEGRFVFGRETKRAKFSSNDSTSSNDSNRRNVVKAGTNPKNLLQTLLMRAGHRPPKYK
TKHLKTNEFRAIVEFKGMQFVGKPKKNKQLAERDAAIEALGWLTHTSDNSHQDADDDSPP
DITDNMLKLLNGRRRRSKHRSS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcggattaggtttagggttaggcctgcttctgagctttgggaggtccctaggg
gcaccgggggatcgaaggtttggagctcttccctttcttttgcggcgcttgatctattat
agtggtggagatgttaactttcgacgttgggtcgacgggcagcgcggtttatgcgggtac
gcggtggaacagttctctgatgatgagtacgagtgcgaactcgataaccaaaagccttct
tcttcagtggccaacattgatgaatggaggtggaaacttagtttgcttttgcgtagtact
gataggcaggagattgtctccagagataaacgagatcggcgtgattacgaacagatatct
aaccttgcaaagggaatggggctttacagtgagatttatgggaaagtggtggctgccagc
aaggttcctttgccaaattacaggcctgatcttgatgataagcggccacaaagagaggta
gtaatccctcttagtttgcaaaggagggttgagggtctacttcaggaacaccttgaccgg
atacttttaacatccagcaaggtcggtgataagttggaaaccaattctgccattaaagac
atcgaggatgtaagtctagatgaaaaccagggctcactggttgatgggtcagtcatggaa
aaggttcttcagagaaagagttggcgtatgcggaatttgcagagaacctggcaggaatca
cctgaaggcatgaagatgctacgatttaggaattctcttccagcatacaaggaaaaggag
agactcttgtctgccattgcacggaatcaggtcatagtgatctctggggagactggctgt
gggaaaactactcagcttcctcaatacatattggaatcagagatagagtctggtcgtgga
gcattctgtaacatcatatgtacacaaccacgaagaatatctgctatggctgtcgcagaa
agagtttctgctgaaagaggagagaatctgggtgaaacagttggttacaaagttcgatta
gaaggaatgaaaggaaaaaatacacatctgcttttttgtaccagtggcattttgctaaga
agattgctgggtgatcgtaatttaaatggtataactcatgtatttgttgatgaaattcat
gaaagaggcatgaatgaagattttttattgattgtgttaaaggatcttcttcctcgtcgt
cgtgatctgagattgattttgatgagtgccactttgaatgccgaattgttctctaattat
tttggtggggcacctatgatccatatccctggcttcacgtaccctgtaagttcgcacttt
ctggaagagattttggagaaaactggatacaagttaacttcattcaaccaaattgatgat
tatggccaagagaaactgtggaaaacacagaggcagctaatgccaagaaaaaggagaaac
caaatcgctgcacttgttgaggatgctcagagaaactcgagctttgagacctatggttcc
agggttcgtgattctttggcttgttggaacccagattgcatagggtttaaccttattgag
gctgttctctgtcatatatgtcggaaggaacggccaggtgctgttttagtattcatgact
ggctgggatgacatcagttgcttgagagaccaactaaaagcacatcccctgttaggagat
ccaaacagggtcttgctgcttacatgtcatggatcaatggccacttctgagcagaaactc
atatttgagaagccaccacctaatatacgtaagattgttcttgctacaaacatggcagaa
gcaagtatcacgattaatgatattgtttttgtggttgactgtgggaaagcgaaggagacc
acatacgatgctttgaataataccccttgtctgctcccatcttggatttcaaaagcttcg
gcccgccaaagaagaggtagagccggccgtgtgcaacctggagaatgctatcatctctat
cctagatgtgtatatgatgcctttccagaatatcagcttccggagcttctaagaactcct
ctgaattccttatgcttgcaaataaaaagtttgcagcttggtacgattggagaattcttg
tcagctgctatgcagcctccagaacccctggctgtccaaaatgcagtggagttactgaag
atgattggagcattagatgagaaggaaaaccttacaaatcttgggcgatatcttgcagtg
cttccagttgatccaaagctagggaagatgctgatcatgggtgctgtctttcgttgcttt
gatccagttctaacaattgtgtctggactaagtgtccgagaccctttcctcttacctcaa
gacaagaaggatttggcaggaacagcaaaaacaagatttgctgcaaaagactacagtgat
catatggctctggtccgtgcatatgaaggatggaaagatgcagatagagaagggtctgct
tatgagtattgttggagaaattttctttcggtccaaactcttcaggctatccattccctt
cgaaaacaattcaattttattttaaaagatgctggtttattagatgctgatcccagcacc
aataataacttgagccataatcagtcactggttcgtgctattatatgctctggcctcttt
ccaggaatagcatctgttgtgcacagggagaagtctatgtctttcaaaacaatggatgat
ggccaggttctactttatgctaactctgtaaatgcaaagtaccagaccatcccctaccca
tggttgatgtttggtgagaaagtcaaagtcaatactgtctttattcgggactctactggt
gtatctgattccatactgatcctatttggtggcattcttattaagggagacacggctggg
cacctgaagatgttggatggctacctcgacttcttcatggatccaagtttggcagaatgc
tattggaacattaaggaagaacttcataaacttattcagaagaagcttcaagaccccaac
atagatatccacaaggaaggcaagtacctaatgcttgctgcgcaggagctagtcacaggt
gatctatgcgaaggaaggtttgttttcggccgtgaaacaaagagggccaagtttagcagc
aacgacagtaccagcagcaatgacagtaacaggagaaatgttgtgaaggctgggacaaac
ccaaagaacttgctacagactttgttgatgagggcaggccacaggcctccaaaatacaag
acaaagcacctcaaaaccaatgagttcagagcgatagtagagttcaaagggatgcagttt
gtgggtaagcccaagaagaacaagcagcttgcagagagggatgctgccatagaggcattg
ggatggttgacacacacttctgataacagccaccaggatgctgatgatgactcccctcct
gatataaccgataacatgctgaaactcctcaatgggcgaaggcgacggtcaaagcatcgt
tcaagttga
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