Elaeis guineensis (African oil palm): 105053459
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Entry
105053459 CDS
T03921
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105053459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105053459
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105053459
Spliceosome [BR:
egu03041
]
Complex C
Other components
Step II factors
105053459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
AAA_22
DEAD
AAA_19
cobW
ABC_tran
AAA_16
SLFN-g3_helicase
AAA_30
NPHP3_N
nSTAND3
AAA_23
AAA_29
Helicase_RecD
NB-ARC
ATPase_2
Motif
Other DBs
NCBI-GeneID:
105053459
NCBI-ProteinID:
XP_073100328
LinkDB
All DBs
Position
10:complement(6453058..6510695)
Genome browser
AA seq
702 aa
AA seq
DB search
MAVLPILEFEGKIVETVDENPVVVIIGETGSGKSTQLSQIFHRRGYTRSGMIAVTQPRRV
AAVSVARRVALELGVQLGEEVGYAIRFEDRTSYRTCIKYLTDGCLLRESLSNPELEQYSV
IILDEAHERSLNTDILLGLMKRLIKTRSSNLKVLITSATLDGVKVSRFFSGCPVLNVPGT
LFPVEKLYSTERPTNYVESSLKTALDIHVREPPGDVLIFMTGQDDIDKMVSKLEERIQDL
EEGSCMDAIVLPLHGSLPPEMQVRVFSPAPPNCRRFIVATNIAETSLTVDGVVYVIDCGY
VKQRQYNPSTGMYSLDIVQISRVQADQRAGRAGRTRPGKCYRLYPASVYREEFLDATVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSRESLEDALRQLYLIDAIDEKGQITHVG
RTMAELPLEPSLSRTLIEANELGCLSQALTVVAMLSAEITIRPARSKAKERKRRQPLSNL
PDGSGWGDHIQLLQIYERWDQADYDLNWCMDNDLQVRSMKFCKDVRKQLSQIIQKIAKGP
VDVQSSLRYKKGEKDYQKLRRALCMGYGNQLAERMLHHNGYHTLGYRSQLVQVHPSSVLE
ADEDGQLPDYVMYHELINTSRPFMRNVCAVEMSWVLPILKKLEKMDTNRLSGGAGVSKGC
EPTKDKLTNSPMKEGNDSKKPDSVDSKIQAARERYLARKAKR
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgctcccgattcttgaattcgaagggaagatcgtggagaccgtggacgagaac
ccggtggtggtgatcatcggcgagacgggctcagggaagagcactcagctctcccagatc
tttcaccggagaggatacacccgttctgggatgattgccgtcacccagcctcgcagggtt
gccgcggtgtctgtcgctaggagggttgcgctggaacttggtgttcaacttggtgaagaa
gtgggttatgcaatccgtttcgaagatcgaacttcttatagaacctgcattaagtatttg
acagatggctgtctacttcgtgagagtctatcaaatccagagttagagcagtactcggtc
attattttggatgaagcccatgaacgtagtttgaatactgacatattgctggggttgatg
aaacggttaatcaagacacgttcttcaaatttaaaagttcttatcacctcggcaaccttg
gatggtgtaaaggtatcaagatttttttcaggttgtcctgtgttgaatgtcccagggaca
ttgtttcctgtggagaagttgtacagcaccgagcgtcccacaaattatgtcgaatcttct
cttaaaactgctcttgatatacacgtccgtgaaccgcctggggatgtcttaatattcatg
acaggacaggatgatattgacaaaatggtgtcaaaattggaggaaagaattcaagacctt
gaggaaggttcttgtatggatgctattgtcctcccacttcatggttctttgccacctgaa
atgcaggtacgtgtatttagtccagcaccaccaaattgtaggcgctttattgttgcgaca
aatatagctgaaacttctttgactgttgatggtgttgtgtatgttattgattgtggttat
gtgaaacaacgtcagtacaacccatcaactgggatgtattctcttgatatcgtgcaaatt
agcagagttcaagctgatcagcgtgctggacgcgctggaagaactcgtcctggaaagtgc
tatcgattataccctgcctctgtctaccgggaagagtttcttgatgcaacagtgccggaa
atccagcgatcatctcttgctggaagtgttctctatcttaaatccctagatcttcctgac
attgatattttgaagtttgattttcttgatccaccatcacgtgaatcgctagaagatgct
ttaaggcagttatacctcattgatgcaattgatgaaaagggacagataacacatgttggc
cgaactatggctgagcttccactggagccttcactttcaaggactttgattgaggcaaat
gagctgggctgtttgtctcaggctttgaccgttgtagcaatgttatcagcagaaattaca
attcgtcctgcgagaagtaaggccaaggagaggaagaggaggcagccattatcaaacctt
cctgatggttctggctggggtgatcacattcagttgcttcaaatatatgagcgctgggat
caagctgactatgatctgaattggtgtatggataatgacttgcaggtacgaagcatgaag
ttctgcaaggatgttaggaagcaattatctcagataatacagaagattgcaaaagggcca
gtggatgtacaatcaagcttaagatataaaaagggtgaaaaggactaccaaaaattgagg
agagctttgtgcatgggctatgggaatcagctggccgagcgaatgttgcatcacaatggc
taccatacacttggttacaggtcacaacttgtgcaggtacatccatcctcagttctagaa
gctgatgaagatgggcagttgccagactatgtcatgtatcacgaactcataaatacctct
cgccctttcatgagaaatgtctgtgcagttgaaatgtcatgggttctgcccatcttaaag
aaactagagaaaatggacaccaacagactaagtggtggtgccggcgtttcaaaggggtgt
gaacccacgaaggacaaactaacgaactcacccatgaaggagggtaatgatagcaaaaaa
ccagactcggtggatagtaaaattcaggcagctcgtgagcgttatcttgcccgaaaagca
aagagatag
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