Elaeis guineensis (African oil palm): 105053900
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Entry
105053900 CDS
T03921
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105053900
03015 mRNA surveillance pathway
105053900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105053900
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105053900
5.6.2.5 RNA 5'-3' helicase
105053900
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105053900
mRNA cycle factors
Common to processing body (P body) and stress granule
105053900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
UvrD-helicase
ATPase
PhoH
SRP54
AAA_22
AAA_16
Hydin_ADK
AAA_32
AAA_25
Ribosomal_S13_N
AAA
Motif
Other DBs
NCBI-GeneID:
105053900
NCBI-ProteinID:
XP_010933539
UniProt:
A0A6I9S518
LinkDB
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Position
11:complement(117734716..117755851)
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AA seq
1267 aa
AA seq
DB search
MAGDSVVNNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPTRSSAWPHPATPD
AVPDSPASDLPASDAGAGSSASPSTSVSSSKGRGGAGNQVAAVDALAAGMSGLSFEETGE
DENYDYGKGDFIEHACRYCGVQNPACVVRCNIPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWD
LSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGV
DDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRVAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDLS
HGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQIVRNTLPRRFGAP
GLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLADKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHMLQQLKDEQ
GELSSSDEKKFKALKRATEREILQNADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPFRLQVQYRM
HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNHMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNGLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYSDRRLFFGGGPGIAHADNFGSLSS
SSPNADKRSGRGKGHSYMPFGPPNGTHKPGVHPVGYPLPRIPVPPFPGGPHSQPYAIPTR
GAVHGPIGAVPQVPQPGNRGFGAGRGNAGGPIGGHLAHQQTSQQALGGIGSAFNFPALDN
PNSQPSAGGPLSQTGLMTQVPVQGLSQTFREGFSIGGMSQDFLGDDFKSQGSHVAYNVAD
FSTQASQSGYGVDYVAQGQAGFPGSYLNQNSQPGYPPHLGTGNDFMTQDYMPHGSQGLFT
QAGFNDPSQDESSQSHFSMAGPAIQSQGLMNSLYSQPFTHYNAQPQNLQTPQLQSQSSPN
QKLHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgactcggtcgtcaataacctctacgagacggcgtcgcagcccgacactggc
ggcgacgcgtataccttcctcgagttcaacacccagggggacgactacgactaccccgag
ttccgggagctctcccagcctacccgatcctcggcctggcctcatccggcgacaccggat
gccgtgccggacagccccgcctccgatctaccggcctccgacgccggcgcgggatcgtcg
gcttccccctcgacatcggtctcgtcctccaagggcaggggaggggccggtaatcaggtg
gcggccgttgatgccctcgcggcgggtatgagcgggctcagcttcgaggagacaggggag
gatgagaattacgattatgggaagggggatttcatagagcatgcgtgccggtattgtggg
gtgcagaacccagcatgtgtcgtaaggtgcaacatcccgtcatgccggaaatggttctgc
aactcgaggggaaatacatcgggatcccacatcgtcaatcacctggttcgagcaaaacac
aaagaagtttgtctccacaaagacagcccattgggagaaacaatcctcgaatgctataac
tgtggttgccgtaatgtttttcttcttggctttatctctgcaaaaacagagagtgttgtt
gttctcttgtgcagagaaccatgtttgagtgtcaatgcattgaaagacatgaattgggat
ctcagccaatggtgtccactcattgatgatcggtgtttccttccttggcttgttaaggtc
ccttctgaacaggaacagctgagagcgcggcaaattagtgctcagcaaattaacaaagtg
gaagagctgtggaaaacaaaccctgatgctactttagaagatcttgagaagcctggagta
gatgatgagcctcagcctgtagctttgaagtatgaagatgcttatcagtatcaaaacgtc
tttgcaccactcatcaagcttgaagctgattatgataagatgatgaaagagtcacagagt
aaagataatgtgacagtacgatgggatattggtcttaacaagaagcgtgttgcttatttt
gtctttcccaaggaagataatgaactaaggcttgttccgggtgatgagttgcggttgcgt
tattcaggagatgcagctcatcctgcatggcagtctgtgggacatgtgatcaagctaact
gcccaggaggaggtagcacttgaacttcgtgctagtcagggagttcctgttgacttgagc
catggctttagtgtggattttgtttggaagagtacaagctttgatcggatgcaaggggcc
atgaaaacttttgccgtggatgaaaccagtgtcagtgggtacatataccatcacctttta
ggtcatgaagttgaacttcaaatagttcgtaacacactaccccgccgctttggtgctcct
ggccttccagagctaaatgcatcccaggtttttgctgtgaaaagtgtccttcagaaacca
attagtttgatacagggcccccctggcacagggaaaactgtcacatctgcagcaattgta
taccacatggctaaacaaggacaagggcaggtcctggtatgtgctccaagtaatgtggct
gttgaccaactggctgacaagataagctcaactggattgaaggttgttaggctttgtgcg
aaatcaagagaagctgttatgtctccagtggagcatctaacacttcactatcaggttcga
catcttgatacatctgaaaagagtgaacttcatatgctccaacagctgaaggatgaacaa
ggtgaattatcaagcagtgatgaaaaaaagtttaaggcattgaaaagggccactgagagg
gagatattacagaatgctgatgtcatttgttgcacctgtgttggtgctggagatcctcgg
ctagcaaacttccgattccgccaggttcttattgatgagtctacccaagcaacagaacct
gagtgtcttattcctttagttcttggggtcaaacaggttgttcttgttggagatcattgt
cagcttggtccagtaataatgtgtaaaaaggcagctcgtgctgggttagcccagtctctt
tttgagcgccttgtccttcttggtcttaaaccattcagactgcaggtccaatatcggatg
catccttccctctcagaatttccttctaatagcttctatgagggtacccttcaaaatgga
gtgacgataaatgaaaggcaatcatctggtattgattttccttggccggttcccaatcgt
cctatgttcttttatgtccagatgggacaagaggagataagtgcaagtggaacatcctac
ctaaatagaactgaggctgcaaatgttgaaaaaattgttactacgtttttgaggagtgga
gtcatacctagtcagattggtgttataacgccatatgaaggacagagggcttatatcgtt
aatcacatgtcaaggaatggtgctcttaggcaacagctctataaggaaattgaggttgcc
agtgttgactccttccaaggtagagaaaaagattacattattttgtcctgcgtaaggagc
aacgaacatcagggtatcggatttcttaatgatccacgtagattgaatgttgcactaact
cgagctcgttatggcattgttattttggggaatccaaaagtccttagcaaacaaccatta
tggaatggcttattgacacattacaaggagcatgaatgcctcgtggaagggccactgaat
aacttgaagcaaagtatgatacaatttcaaaagcccaaaaagatttacagtgaccgcaga
cttttttttgggggtggtccagggattgcgcatgccgataactttgggtccctcagttct
tcgagccctaatgccgataagagaagtggacgtggtaaaggtcactcttatatgccattt
ggtccaccaaatggtactcataagcctggtgtgcacccagtaggatatcccctacctcga
atccccgttccacctttccctggaggtccccactctcaaccgtatgcaattccaactcgt
ggagctgttcatggacctattggagctgttccacaggtccctcaacctgggaataggggt
tttggggctggtcgtggtaatgctggtggtcctattggtggccaccttgcacatcagcaa
acctcacaacaagctttgggtggtattggttctgcttttaatttccctgccttggacaat
cctaacagtcagccttctgctgggggtccattatcccaaactggactgatgacacaggtt
ccagttcaaggtcttagtcaaacttttcgtgaaggtttttctataggtggcatgtctcag
gactttttgggggatgactttaaaagccaaggatcacatgttgcatataatgtggcagat
ttctcaacacaggcttctcagagtggttatggtgttgattatgttgctcaaggacaggct
ggattcccagggagttacctgaaccagaattcacagccaggatatcccccccatctgggc
actggaaatgacttcatgactcaggactatatgcctcatggatcacaaggtcttttcacc
caagcaggattcaatgacccttcacaagatgagtcatctcagagccattttagcatggct
ggacctgctattcaatcacagggcctgatgaattctctctactctcaaccctttactcat
tacaacgctcagcctcaaaatttgcaaactccgcagctgcaaagtcagagctcacccaac
caaaaacttcattacaatggctaa
DBGET
integrated database retrieval system
