Elaeis guineensis (African oil palm): 105054436
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Entry
105054436 CDS
T03921
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
egu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105054436
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105054436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105054436
04121 Ubiquitin system [BR:
egu04121
]
105054436
03400 DNA repair and recombination proteins [BR:
egu03400
]
105054436
Enzymes [BR:
egu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105054436
Spliceosome [BR:
egu03041
]
Complex B
Other components
Prp19 complex
105054436
Complex C
Prp19-CDC5 complex
105054436
Ubiquitin system [BR:
egu04121
]
Ubiquitin ligases (E3)
U-box type E3
105054436
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
105054436
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
DSE1_N
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_NOL10_N
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WDR90_beta-prop_4th
CFAP251_N
U-box
PAC11
Beta-prop_VPS8
NBCH_WD40
Beta-prop_WDR41
Beta-prop_DCAF4
RMC1_N
zf-Nse
KNTC1_N
PEP5_VPS11_N
TRM82_WD
WD40_like
Beta-prop_ACSF4
Beta-prop_RSE1_2nd
PAS_11
TPR_MLP1_2
Beta-prop_Nup120_160
WDR54
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
105054436
NCBI-ProteinID:
XP_073101644
UniProt:
A0ACM7BK58
LinkDB
All DBs
Position
11:121454382..121467560
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AA seq
526 aa
AA seq
DB search
MICAISGEVPEEPVLSKKSGLLFERRLIERHIADYAKCPVTKEALTMDDILPVKTNKAAK
PRPLQAASIPGLLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARMLLAQAERQIPSSMASAANANNIVSNGKRAAEEELGPDGKRIHPGINPGMIAEL
TECNAMLSGQRKKRQISPTLAPIDALERYTQISSHPLHKTNKPGILSVDIHPSKDIIATG
GIDANAVLFDRSAGQIICTLTGHSKKVTSVKFVPRDELLISGSGDKTVRIWQGTEDGNYD
CVHVLKDHSAEVQAVTVHATNNYFVTASLDNTWCFYDLATGSCLTQVGEASGEEGYTSAA
FHPDGLILGTGTSEALVRIWDVKSQSNVAKFDGHAGAVTALSFSENGYFLATAALDGVKL
WDLRKLRNFRSFTPYDSDTPTNSVEFDFSGSYLAIAGSDIRVYQVANVKLEWNHIRTFAD
LSGTGKVTCIKFGADAKYMAVGSMDRNLRIFSLPGNDSEEPRSPGH
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgatctgtgcgatctccggtgaagtgccggaggagccggtgctctcaaagaaatcaggg
cttctgttcgagcgccggctgatcgagcgccacattgcggattacgcgaagtgtccagtt
accaaggaggcgctcacaatggacgatatcctgcctgtgaagacaaataaggcagcgaag
cctagacccttgcaagctgcgagcatccctgggctgcttggaatgttccaaaatgagtgg
gatgctttgatgctgtccaattttgcactggaacagcaattgcatacagcaaggcaagaa
ctaagtcatgcgctataccagcatgatgctgcatgccgtgttatagcaagattaaagaag
gaaagggatgaggccagaatgctcttggctcaggctgaaagacagattccttcatcaatg
gcatctgctgctaatgcaaacaatattgtcagcaatgggaaaagagctgcagaggaggag
ttgggccctgatgggaaaagaattcatccaggtataaatcctggtatgattgcagaactt
acagagtgtaatgctatgctttcaggacagcggaagaagcggcagatttcaccaacattg
gcgcctattgatgcattggagagatacacacaaatttctagtcatccccttcacaagact
aacaagccgggcatactatctgtcgatatccatccttcaaaggatataattgcaactgga
gggattgatgcaaatgcagtactttttgataggtcagcaggtcagatcatatgtacgctc
actggacactcaaagaaggttaccagtgtgaaatttgttcctcgggatgagcttcttata
tctggctcaggagataagactgttcgtatttggcaagggactgaagatgggaattatgat
tgtgtacatgtcttgaaagaccatagtgcagaggtacaagcggtcacggtccatgctaca
aataattactttgtgactgcttccttggacaacacttggtgtttctatgatcttgctact
ggatcatgcctcactcaggttggtgaagcttcaggagaagagggctacacttcagctgcc
tttcaccctgatggtcttatccttggaacaggcacttctgaagcacttgttagaatttgg
gatgtaaaatcacagtcaaatgttgcaaaatttgatgggcatgctggagcagtcactgcc
ttgtctttttctgaaaatggttatttcctagcgactgcagctcttgatggtgttaagctg
tgggatcttcggaaactgaggaacttcagatcctttactccctatgactcagatacacca
acaaattccgtggaatttgattttagtggaagctatcttgcaattgcaggttctgatata
agggtctaccaagttgcaaatgtaaagctggaatggaatcatattaggacatttgccgat
ttatcaggcacaggaaaagtgacatgcataaagtttggagcagatgcaaaatacatggct
gttggttccatggaccgtaatcttcgaatatttagtctcccagggaatgactcagaagaa
cccagatcaccaggtcactga
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