Elaeis guineensis (African oil palm): 105056402
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Entry
105056402 CDS
T03921
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105056402
09122 Translation
03013 Nucleocytoplasmic transport
105056402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105056402
03041 Spliceosome [BR:
egu03041
]
105056402
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105056402
Spliceosome [BR:
egu03041
]
Complex C
Other components
EJC/TREX
105056402
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105056402
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
DUF4350_C
PBP1c_linker
Motif
Other DBs
NCBI-GeneID:
105056402
NCBI-ProteinID:
XP_010936895
UniProt:
A0A6I9S475
LinkDB
All DBs
Position
13:complement(16640499..16682470)
Genome browser
AA seq
1843 aa
AA seq
DB search
MSVQSPEFKYITEECLQEWKASNAAFKIPDPVPITRFLYELCWAMVRGDLPFQKCRVALD
SVVFVEEQQREDMATILADIIAHMGQDPTMPGDCRARLIKIAKWLVESSFVPSRILQERC
EEEFLWDSELIKIKAQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGGLDS
MTEKTSTVTISRIKSLIGHFDLDPNRVFDIVLECFELYPEDSIFYNLIPIFPKSHAAQIL
GFKFQYYQHMEVNTPVPLSLYRLAALLVKANFIDLDNIYAHLLPKDDEAFEHYDAFISKR
FDEVNKIGKINLAATGKDLMDDEKQDVTIDLFTALDMDSDAVTERAPEVENNQKLGLLIG
FLSVDDWYHAQVLFDRLSHLNPVEHTRICNGLFRVIEQTMSEAYAVVYQKHLEIIGTAGP
DVMESTAGSSIQNSSIDLPREFFQMLSAAGPYLHRDTILLQKVCRVLRAYYLSAQELAGP
RAKEAKLRVEEALGKCVLPSLQLIPANPAVGQVVWDVLSLLPYEDRYRLYGEWEKDDERI
PMVVAARQIAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMII
PVVDAFKYLRQLEYDVLEYVVIERLAQGGREKLKDDGLNLSDWLQSLASFWGHLCKKYPS
MELRGLFQYLVNQLKKGSGIELVLLQELIQQMANVQYTENMTEEQLDATAGSETLRYQAT
LFGMTRNNKALSKSTNRLRDSLLPKEEPKLAIPLLLLIAQHRSMVIINAEAPHIKMVSEQ
FDRCHGTLLQYVEFLLSAVAPSTTYAQLIPSLDDLVHKYHLDPEVAFLVYRPVMRLFKGV
SGAEICWPLDITEDSNIQSANNEAEPTTLSSDVVLDLGSPWKPVKWSDLLDTVWSMLPPK
AWNSLSPDLYATFWGLTLYDLYVPRHRYESEIAKQHAAIKGLEELSDNSSIAITKRKKDK
ERIQELLDRLISEFQEHEQHVASVHQRLSHEKDKWLSSCPDTLKINMEFLQRCIFPRCIF
SMQDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEFEAGRLGRFLYETL
KMAYHWKSDETIYERECGNMPGFAVYYRYPNSQRVTYSQFIRVHWKWSGRITRLLVQCLE
STEYMEIRNALIVLTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKVLATGVAAALAAR
KSSWVSEEEFGMGHIDLKPAASPAKSLAGNQGNASNGSALSISHNEMTGMRNATTGNQLA
DPLNTAKDQVARAKSTDGRLDRSESGMLLKSDSAQQKPRSGSSTNGPDSQTLSSSLPPKP
SAIVKNPDELAKVSPEETAAKVTSKGAVESETRPQQKRAAQNSLGRLPRQEAVKEDAKSG
KSISRAANQQSSATADKDLSAHQSESRQLGSAINSSSTSNGNLISASGKVAISSSKMNDV
HASLSKMDSGSIKSLDDNTEVSDAFPKQQKRTVPTEEQDRLNKRRRGETEGKDGEAMEVR
MSDKERTFDPRSVDKSYFSDHDRPTIDEQNLSRPMDKLSDKSKEKTIERYDKDHREKLDR
PEKSRGEDILEKSRDRSIERHGREHSVERVQERVADRTIDRSVDKSRDDRSKDDRNKPRH
NEVAVDKVHPDERFHGQGLPPPPPLPPSFVPQSVGGSRRDEEPDRRVNNARHVQRLSPRH
DEKERRRSEENVLASQDDAKRRRDDDFRERKREERDVVSNKAEERDRDKGNILKDDVDST
AASKRRKLKRDHTSSSEAGGEYSPVIPPPPPLLATGMSQSFDSRERGDRKGMGQHRAVYA
DEVPRMHGKEAASKINRRETDQLHEREWEEDKRRTDAKKKHRK
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtccaatcccctgaattcaagtatatcaccgaggaatgcctccaggaatggaag
gcctccaacgccgccttcaagatccctgatccggtccccataacgcggttcctctacgag
ctttgctgggccatggttcgtggggacttgccgttccagaagtgcagggtggcgctggac
tcggtggtgttcgtggaggagcagcagagggaggatatggcgaccatcctcgccgatatc
atcgcccacatggggcaagatcctacgatgcctggagattgtcgtgctcgtcttatcaaa
attgcaaaatggcttgtcgagtcatcatttgttccatctaggattctgcaagagcgctgc
gaggaagaatttctgtgggattctgaattgattaaaataaaggctcaagatttgaaggcc
aaagaggttagagtaaacacccgccttctttatcagcaaacaaaattcaatcttctacga
gaggagagtgagggctatgccaaattggtgacacttctttgtcagggtggcttagattca
atgactgagaagacatcaacagtgacaattagcagaattaagtcattaattgggcacttt
gatctggacccaaatcgtgtttttgatattgtgttggagtgttttgaactttatcctgag
gatagtatcttttataacctcattcctatatttccaaagtcacatgctgctcagattttg
gggttcaagttccagtattatcaacatatggaagtcaacacccctgttccactgagtctt
tatcggcttgcagctttgctggtgaaagcaaactttattgatcttgataatatatatgca
cacttacttccaaaggatgatgaggcatttgagcactatgatgcatttatttcaaaacgg
tttgatgaggtcaacaaaattggcaaaataaatcttgctgctacaggaaaagaccttatg
gatgatgagaagcaagatgtgactattgatctgtttactgctttggacatggatagtgat
gcagttacagaacgagcgcctgaggttgaaaataatcagaaacttggtttgcttattggg
ttcctttctgttgatgactggtaccatgcccaggtactctttgatcgtttgtcccatcta
aaccctgtggagcatactcgaatttgcaacggcctatttagggtcatcgagcagacaatg
tctgaggcctatgctgttgtttatcaaaaacatcttgaaatcattggtactgctggtcct
gatgtcatggaatcaacagctggatcttccatccagaattcttctatcgatctccctcga
gaattttttcagatgctttctgctgctggaccatatcttcatcgtgataccatactgctt
caaaaggtatgcagagtgttgagagcatactacctgtccgcccaagagttagctggccct
cgagctaaagaagctaagcttagggttgaagaagcacttggaaaatgtgtgcttccatca
ttgcaattaattcctgcaaatcctgcagttgggcaggtggtatgggatgtcctttctctg
ctcccctatgaggaccgataccgcctgtatggtgagtgggaaaaggatgatgaaagaatc
cccatggttgtggctgcaaggcagattgcaaagttggacactagaagaatattaaaaagg
cttgcgaaggaaaatttgaagcagctgggtcgcatggttgccaaacttgctcatgctaat
cctatgactgtacttcgcacgattgttcaccagattgaggcatacagggatatgataata
ccagttgtagatgctttcaagtacttgagacagctggagtatgatgtgttagaatatgtt
gtaatcgaacgtctagcacaaggaggacgtgagaagctcaaagatgatggcctgaattta
tcagattggcttcagtctcttgcatccttttggggccatctttgcaagaaatacccatcg
atggagctgaggggcctttttcagtatcttgttaatcaattgaagaagggctcaggcatt
gagcttgttcttttgcaggagcttattcaacaaatggcaaatgttcagtacactgagaac
atgactgaggaacaacttgatgctacggcaggaagtgaaacattgagataccaagctact
ctctttggaatgactaggaacaataaggcattgagcaagtctaccaacagactcagggac
tctttacttccaaaggaagagcctaagcttgctattcctcttttattacttatagctcaa
catcgctccatggtcatcataaatgccgaagcaccacacatcaaaatggttagcgagcag
tttgacaggtgccatggcacgcttcttcaatatgttgagtttctcttgagtgctgtagct
ccgtctacaacttatgctcagctgattccttctctagatgatcttgttcacaagtaccat
cttgatccagaggtggcatttctggtatatcgccctgtgatgaggctcttcaaaggcgta
agtggagctgaaatatgctggcctcttgatataactgaagattcaaatattcaaagtgca
aataatgaagcagaacccacaactttatctagtgatgttgttctggatcttggttcacca
tggaagcctgtcaagtggtcagaccttcttgacacagtctggtcaatgctgcctccgaaa
gcttggaatagcctctctcctgatctgtatgctacattttgggggcttacactctacgat
ctttatgttcctagacaccgttatgaatcagagattgccaagcagcatgctgctattaaa
ggcttagaagaactttctgacaactccagtatagctatcacaaagcgcaaaaaagacaag
gaaaggatccaagagttacttgatagattgattagtgaatttcaggagcatgaacagcat
gttgcatctgtgcatcaaaggctcagtcatgagaaggataagtggctgagttcctgccca
gacactctaaaaataaacatggagtttcttcaacggtgtatcttcccacgctgcatcttc
agcatgcaggatgctgtgtattgcgctatgtttgtgcatacactacattcgcttggcaca
ccattttttaacacggtcaaccatatcgatgttcttatctgtaaaaccctacagccgatg
atttgttgctgcaccgaatttgaagccggcagacttggaaggtttttatatgagacacta
aagatggcttaccattggaagagtgatgagaccatatatgaacgtgaatgtggaaacatg
ccagggtttgctgtttattacagatatccgaacagtcagcgagtaacttatagccaattt
attagagtacactggaaatggagtggaagaataaccagattgcttgtacagtgcttggaa
tctactgaatacatggaaatacgaaatgctctgattgtgttgacaaaaatatctagtgtt
ttccctgttactcgaaagagtggaattaatcttgaaaagcgggtagctaaaattaaaggg
gatgagagggaagatttgaaagtcttggctactggtgtagctgccgctttggctgctcgc
aagagctcatgggtttctgaagaagagtttggtatgggtcatattgatctaaagcctgca
gcatcaccagcaaaatcacttgctggtaaccagggcaatgcatcaaatggttctgctctt
agtatttctcataatgagatgactgggatgaggaatgccactacagggaatcagctagca
gatcctttgaatacagctaaagaccaggtggcacgtgcaaaatctacagatggcaggtta
gatcgatcggaaagtggcatgcttttgaaatctgattcagcacaacagaaaccaaggagt
ggctcttccacaaatgggcctgatagtcaaacactctcttcttctttgccgcctaagcct
tctgcaattgtgaaaaatccagatgaacttgcaaaagtttcaccagaggaaacggctgca
aaagttacttcaaagggtgctgtggaatctgagacaagaccccagcaaaaacgtgcagcg
cagaattctcttggtaggctaccaagacaggaggcggtcaaagaagatgctaaatctgga
aaatcaatcagcagagcagccaatcaacaatcttctgccactgctgacaaggatctttca
gctcatcaatcagagagtaggcagcttggtagtgctattaattcttcctccacctccaat
ggtaacttaatttcagcctcaggaaaagtagcaatttcctcctcaaaaatgaatgatgtg
catgctagtttatcaaagatggacagtggaagtatcaaatccttggatgacaatacagaa
gtttctgatgctttccctaagcagcaaaagagaactgttccaacagaagaacaagataga
ttgaataaacgtaggagaggagagactgaaggaaaggacggtgaggctatggaagttcgg
atgtctgataaagagagaacttttgaccccagatcagtggataaatcttacttttcagat
catgacaggcctacaatcgacgaacaaaatctgagcaggcctatggataagctttctgat
aaatccaaagaaaaaactattgaaagatatgacaaggaccacagggaaaaattggatcgg
cctgaaaagagccgtggtgaggacattcttgagaaatcaagagatagatcgattgaaaga
cacggaagagaacattctgttgaaagagtgcaggagagagtagcagataggaccatagat
aggtcagttgataaatctagagatgacagaagcaaagatgacaggaataaaccacgacac
aatgaagttgctgtagataaggtgcatcctgatgagcgttttcatgggcaaggtttgcca
ccaccacctccactgcctccaagttttgttccccagtctgttggtggtagccgaagagat
gaagagcctgatagaagggtcaataatgctaggcacgtacagaggctgtctcctaggcat
gatgaaaaagagcggaggcgctcggaggagaatgttttagcgtcacaggatgatgcaaaa
cgtagaagagatgatgatttccgagaaagaaagcgggaggaacgagatgttgtgtcaaat
aaggcagaagaaagggaccgagataaggggaacatactgaaggatgatgtggactctact
gcagcctccaagcggcgaaaacttaaaagagaccatacatcctcttctgaagctggtggg
gagtattcaccggtcattccaccacctcccccactgcttgcaacgggaatgtctcaatca
ttcgattcaagggaaaggggagacaggaaagggatggggcagcatcgggctgtttatgcg
gatgaagttccaagaatgcatggcaaggaagctgcaagcaagatcaatcgtcgggagact
gatcagttgcatgaaagagaatgggaggaggacaagcgaaggactgatgccaagaaaaag
catcgcaagtag
DBGET
integrated database retrieval system
