Elaeis guineensis (African oil palm): 105058147
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Entry
105058147 CDS
T03921
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105058147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105058147
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105058147
Spliceosome [BR:
egu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105058147
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
PWI
AAA_19
AAA_30
nSTAND3
T2SSE
AAA_16
Cas3-like_C_2
ABC_tran
SRP54
AAA_7
Motif
Other DBs
NCBI-GeneID:
105058147
NCBI-ProteinID:
XP_010939275
UniProt:
A0A6I9S953
LinkDB
All DBs
Position
2:78518343..78536654
Genome browser
AA seq
1050 aa
AA seq
DB search
MSNESHLKTWVEDKLMSLMGYSKSVVVQYVIRLAKESSSPDTLMSKLVEFGLSSSIDTRS
FAAEMFAKVPHKQSGLSNYQKEEKEAAQFAKKQRSYKLLDADDDEGDDRLPSTSATSQPG
KMGSHQKRFRKKSETQESEDDEPTTVGENGRHVRRRTSGVDDDDDDIESEEARIRDQEER
EQLERNIRERDAATTRKLMEPKLTKKEEEEIIRRSQALEQNDTLELRKVSRQVYLQKRRD
QKLLELRDDIIDHEYLFEGVKLTDAEERELRYKKKIYELAKEHLEDFDDISEYRMPEAYD
QEGGVNQEKRFAAAMQRYRDPDAGDKMNPFAEQEAWEEHQIGKATLKFGSKNGKQAADDY
QYVFEDGIDFIKASVMDGVQAEDELPSEEPDVSSAKSKLEKLQEERKTLPIYPYREELLQ
AVHDHQVLVIVGETGSGKTTQIPQYLHEAGYSKNGKIGCTQPRRVAAMSVAARVSEEMGV
KLGHEVGYSIRFEDCTSDKTFLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDI
LFGLVKDITRFRKDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTTAPEADY
IDAAIVTVLQIHVTQPPGDILVFLTGQEEIETVDEILKHRTRGLGTKIAELIICPIYANL
PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFCKIKSYNPRTGMESLLI
NPISKASAMQRAGRSGRTGPGKCFRLYTAYNYHHDLDDNTVPEIQRTNLANVVLTLKSLG
IHDLVNFDFMDPPPSEALLKALEQLFALNALNSRGELTKTGRRMAEFPLDPMLSKMIVAS
DKYKCAEEIISVAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLTVYNSWKE
TNYSTQWCYENFIQVRSMKRARDIRDQLEGLLERVEIELTSNMNELDAIKKAITSGFFHH
SAKLQKTGAYRTVKNPQTVYIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPEWLV
EIAPHYYQLKDVEESGSKKLPRGKGRAALQ
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgaaagccacttgaagacatgggttgaggacaagttgatgtcgttgatgggg
tattccaagagtgtagttgttcaatatgtgattcgcttggccaaggaatcttcttcacct
gacactcttatgagtaagcttgtagagtttgggctctcttcatcaatagatacacgctca
tttgctgcagagatgtttgctaaagtcccacataagcagtctgggttgagtaattaccag
aaagaggaaaaagaagcagctcagtttgcaaagaagcagaggagttacaagttgctggat
gctgatgacgatgaaggggatgaccgactaccaagtaccagtgcaacttctcagccagga
aaaatgggttctcatcaaaagcgttttagaaagaagagcgaaactcaagagagtgaagat
gatgagccaaccacagttggagaaaatggccgacatgttcgaaggcgtacatcaggggtg
gatgacgatgatgatgatattgagtcggaagaagccaggatacgtgaccaagaagaacga
gaacagctggaaaggaatatcagagaaagggatgcagccactactcgaaagttgatggag
ccaaagttaacaaagaaggaagaagaggagatcattcggaggtctcaagcattggagcaa
aatgacactttagaactaagaaaagtttcaaggcaagtatatctgcagaagaggagggac
cagaagctcttggagttgcgggatgatattattgatcatgagtatctctttgagggtgta
aagttaacggatgcagaagaacgtgaactaaggtacaaaaagaaaatttatgagcttgca
aaggagcatttggaggattttgacgatattagtgagtatcggatgcctgaggcatatgat
caagaagggggcgtaaatcaagagaaaaggtttgctgcagctatgcagcgttacagggat
cctgatgccggagataaaatgaacccatttgcagaacaagaagcatgggaagaacatcaa
attggaaaggcaactctaaagtttggctcaaaaaatggaaagcaagcagctgatgattat
cagtatgtttttgaagatgggattgatttcatcaaggcatctgttatggatggcgtccag
gctgaagatgagttgccttctgaggaacctgacgtttcatctgcaaaatctaagcttgag
aaactgcaagaagagagaaaaactctgcctatatatccatatcgagaggagctactacag
gctgttcatgaccatcaggtcctcgttattgttggagagactggctctgggaagactact
cagataccacagtatcttcatgaagcaggatattcaaaaaatgggaagattggatgcaca
cagccgcgccgtgttgcagcaatgagtgttgctgcacgagtgtctgaagagatgggtgtt
aagcttggtcatgaggttggttactctattcgttttgaagattgcacttcagacaagact
tttcttaaatatatgacggatggtatgcttttgcgtgagtttcttggtgaacctgactta
gcaagctacagtgttgtgatggtagatgaagcacatgagagaacactttcaacagatatc
ttatttggtttggtgaaggatattactcgcttccggaaagatctcaagttgcttatctca
agtgccacactagatgctgagaagtttagtgattactttgactctgcgccaattttcaaa
ataccggggaggcgatatcctgttgaaatacattttactacagcacctgaagcagattat
attgatgctgccatcgtcactgttcttcaaatacatgtgactcaaccacctggtgatatt
cttgtgttccttacagggcaggaagaaattgaaacagttgatgagatccttaagcaccgg
acacgtggtttaggaacaaagatagcagaactcataatatgccctatctatgctaacctt
ccaactgagctccaagcgaagatctttgaacctaccccagaaggtgctcgcaaggttgtc
ttggcaacaaacatagcagaaacttcactaacaattgatgggattaaatatgttgttgat
cctggattttgtaagattaagtcatataatcccaggactgggatggagtctttgctaatt
aatccaatctcaaaagcatctgcaatgcaaagggctggaagatctggacgtactggacct
ggaaaatgcttccgtctgtatactgcatataattatcaccatgatcttgatgataatact
gtaccagagattcaaaggactaatcttgcgaatgttgtgctcactcttaaaagcttgggt
attcatgacttggtgaattttgatttcatggatccaccaccatcagaggcattactcaag
gcccttgaacaactttttgctcttaatgcattgaacagccgtggagagttgaccaagact
ggaagaaggatggcagagtttccacttgatcccatgctttccaagatgatagttgcttca
gacaaatataagtgtgctgaagagattatatctgttgctgcaatgctgtctgttggtaat
tcaatattttatcgtccaaaggataagcaagttcatgcagacaatgcaagaatgaatttt
cacactgggaatgtgggagaccatatcgcactgctcacagtatacaattcctggaaggaa
actaactactcaactcagtggtgctatgaaaattttattcaggttcggagtatgaaacgt
gctagggatattagagaccagttggaggggctcttggaaagagttgagattgaacttacc
tcaaatatgaatgagttggatgcaataaaaaaggctataacatcaggttttttccaccat
tctgcaaagctgcaaaagactggtgcatacagaactgttaaaaatcctcaaactgtctat
atacacccaagttctggtctggcccaggtgcttcctcgatgggttatataccatgagctt
gtgcttaccacgaaagaatatatgagacaggttacagaattaaagcctgaatggctggta
gaaattgcacctcactattaccaattgaaggatgttgaagaatctggatcgaagaaatta
cctcgtgggaaagggcgggctgcattgcaatag
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integrated database retrieval system
