Elaeis guineensis (African oil palm): 105059026
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Entry
105059026 CDS
T03921
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105059026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105059026
03036 Chromosome and associated proteins [BR:
egu03036
]
105059026
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105059026
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105059026
mRNA degradation factors
5'-3' decay
Decapping complex
105059026
Chromosome and associated proteins [BR:
egu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105059026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Sema4F_C
TFIIA
Motif
Other DBs
NCBI-GeneID:
105059026
NCBI-ProteinID:
XP_010940461
UniProt:
A0A6I9SBK9
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All DBs
Position
16:42945365..42955872
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AA seq
490 aa
AA seq
DB search
MNPRGRYPPGIGNGGGGNYGANSNYYERNPQLQQHYIPRNQIQSHQNQQFQQQQQQQQQW
LRRNQMGSNSGSSAAAAKSVQPDAVDSSSQDWKAQLKIPPPDTRYKTEDVTGTKGNEFED
YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ
DYNVIQVVILVPTRELALQTSQVCKELGKYLEIQVMVTTGGTSLKDDIMRLYQPVHLLVG
TPGRILDLAKKGVCILKDCAMLIMDEADKLLSPEFQPSIEQLICFLPANRQILMFSATFP
VTVKQFKDRYLPKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ
AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP
PQIDQAIYCR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgcgaggaagatatcctcccggcatcggcaacggtggtggggggaactatgga
gctaactctaattactatgagagaaatccccagctgcagcagcactatattccgaggaat
caaatacagagccaccagaatcagcaattccaacagcaacagcaacaacagcagcaatgg
ttgagaaggaatcaaatgggaagcaattctggcagcagcgcggcagctgcaaaatctgtt
caacctgatgccgttgattccagttctcaagattggaaggcacagttgaagataccacca
cctgacacacgttacaagactgaggatgttactggaactaaaggaaatgaatttgaagac
tattttctgaaacgggagctgcttatggggatatatgaaaagggatttgagagaccttct
cctattcaggaagaaagcattccaattgcattaactggcagtgatattcttgccagagct
aaaaacgggactgggaaaacagctgctttttgcattcctgcgctggaaaaaattgatcaa
gattataatgtcattcaagttgttatattggttcccactcgagaattagcacttcagaca
tcgcaagtttgcaaggaacttggaaaatatttggagattcaagttatggtcactactgga
ggaaccagcttgaaagatgacattatgcgtttgtaccagcctgtacatttacttgttgga
accccaggtcgcatacttgatctcgcaaaaaaaggtgtttgcattctgaaggattgcgca
atgctcattatggatgaggcagacaaacttctatctccagagtttcagccttcgatagaa
cagctgatatgttttcttcctgcaaatcggcagatattaatgttttcggcaacatttcct
gtaacagtgaagcaatttaaagaccgatatctgccaaaaccttatataattaatcttatg
gacgaacttactctaaagggaataacacaatattatgcttttgtagaagaaagacaaaag
gttcactgtctcaatacccttttctcaaagcttcaaataaaccaatctatcatattctgc
aattcggttaatcgggtagaactattggcaaagaaaatcacggagcttggttattcctgc
ttttacattcatgctaagatgttgcaagaccatcggaatcgagtctttcatgactttcgt
aatggtgcatgcaggaatctcgtttgtacagatctttttacaaggggtattgacattcaa
gctgttaacgttgttatcaactttgattttcccaagaactctgagacatatctccaccgg
gttgggcgttcaggaaggtttggtcaccttggtttagcagttaacctgatcacatatgag
gatcgtttcaacttgtataggattgagcaagaacttggaactgagataaagcagattcct
cctcagatagatcaggctatctactgcagatga
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