Elaeis guineensis (African oil palm): 105060553
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Entry
105060553 CDS
T03921
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105060553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egu03041
]
105060553
Enzymes [BR:
egu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105060553
Spliceosome [BR:
egu03041
]
Complex C
Other components
Step II factors
105060553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
Helicase_C
IBR
DEAD
OB_NTP_bind
IBR_1
AAA_22
Rcat_RNF216
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RRM_1
IBR_2
zf-C3HC4_4
AAA_19
ABC_tran_CTD
Seryl_tRNA_N
ABC_tran
nSTAND_NTPase5
T2SSE
AAA_29
DMPK_coil
Motif
Other DBs
NCBI-GeneID:
105060553
NCBI-ProteinID:
XP_010942622
UniProt:
A0A6I9SEZ2
LinkDB
All DBs
Position
13:complement(4624870..4657813)
Genome browser
AA seq
1711 aa
AA seq
DB search
MASHLMAGQLPPPSPAADASASVHGAPYRGSGKRDPSRRELDVIDALINSCPSRPVEFFV
YASGRVVAKLFYRDERETMDTVLFFWRRRLDGDHLLRPKVVVSGTSVRYDGEEAAARVRA
LFVAHACDLLKGESVKRCEQRIGEITAEIKKVSAELGGRNRLKDYEELYAKRTQLQTEEE
QLRKKMEEFRAAMHCILRHLGEPLEEVGVEKEAAFELLKFAGGRDWGCIHSVMVRECRRL
DENLPLYACRRQILRNIVANQVMILIGETGSGKSTQLVQYLADSGLVTDGSVVCTQPRKI
AAISLAQRIAEESYGCYAENSVVSYPTYSSSQLFNSKVIFMTDHCLLQHCMNGIRLGGIS
YIIIDEAHERSLNTDLLLALIKRKLLERNDLKLIIMSATANASKLSDYFCGCSTFYVMAR
NFPVEVKYVPDISADDSYAFITKYYSGNYPSYLSDVVKMVNVIHKTEDDGAILAFLTSQI
EVEWACEKFNDPSAVVLPMHGKLSCEEQNRVFQSYPGKRKIIFSTNVAETSLTIQDVKYV
VDSGMVKESKFDASSGVNVLKVCRISQSSANQRAGRAGRTAPGRCYRVYSEHDFQSMQMH
QEPEIRKVHLGIACLRILALGVKNVQDFEFIDAPSPKAIEVATQSLIQLGAIIHCKDAFE
LTETGHCLIKLGIEPRLGKIILDCVSCGLIKEGLVLAAVMTNASSIFCRVGSHEQKLKAD
CLKVPFCHHDGDLFTLLSVYKEWEDENESKSKWCWQNSINAKSMRRCQDTMQDLKNCLLH
ELKIVIPNYWLWNPHKPSEHDKSLKKVILASLAENTAMYSGCDQLGYKVALTGQNLPLHP
SCSLIVYGHKPSWVVFGEILSISDQYLFCVTAVDYDCLYNIEPPLFDVMQLESQKMHMNV
VTGVGVNLLKRLCGKFNNNLRCLVSSVQEVCKDKNICIDVDFNKREIQLFAPKNSMEKVC
SIVNDALELETQWLRDECIEKCLYHGSLGVSPIALFGSGAEIKHVELRKRYLTVEISHPN
AHTLDDKELLVMVDKHGYGIANFHKHAGSGQGGSDLNKWGKVTFLSPEAAEDAVARLNNV
EFHGSLLKVLPLRAGDHKVLPFPSVKAKVCWPRRPSKGVALIACAKEDAEFIVKDCSTLL
IGERYVNCEVSVKSKDCVFVTGIQKDITEPEIYDAFVGATKRRILGVRLLRGEAMNNLPP
STYAEFLVREIAPFMPSKNSSNCFWVEVFDYEPRDWMVKAIITFDGNLHLEAANALNYIQ
GRVLPCCLPWQKIQCQHMFYSSVSCSPHVYFVLKKQMDQLLERFKNQKGVSYNLERNENG
AFRIKLSANSPKTIADLRNPLEQLLKGKTISHPNLTPRVLQSRDGIVLMKSVERETRTCI
MYDRQNMIVKVFGPQKAVDAAEVKLVRSVLSFHENKQLEIRLRGHNLPPGLMKEVVRRFG
PDLQGLKEKVPGVNVILKTRDHILSVQGSNELKQKVEEIISEVTQSLGSGSAFEQSLDEA
ICPICLCELEEPFKLEECGHDFCRTCLIEQCESAIRSRDGFPLCCTKKGCGTPLLLVDLK
SLLCSDKLEELFRASLGAFVASSEGAYRFCPTPDCPSVYEVSTPNAAAGHFVCGACSAEV
CTKCHLEYHPFVSCEQYREFKEDPNLSVVEWRLGKEHVKDCPSCSHIIEKVDGCNHVACR
CGVHICWVCLESFESSEKCYSHLASSHHAIV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcatctcatggccggccaactcccacccccgtccccagctgccgacgcctct
gcgtccgttcatggtgctccttaccgcggaagcggtaagagagaccccagccggagggag
ctggacgtcatcgacgccctgatcaactcctgcccctcccggccggtggagttcttcgtc
tacgcctccggccgcgttgtcgcgaagctcttctaccgggatgagagagagactatggat
actgtcctcttcttctggcggcgccgcctcgatggggaccaccttctgcgtcccaaggtg
gtcgtctccgggacatccgttcgctacgacggggaggaggctgcggcccgggtgagggct
ctctttgtcgcccacgcctgcgacctcctcaagggcgagtcggtcaagaggtgcgagcag
aggattggggagatcactgccgagatcaagaaggtttcagcggagctgggcggccggaac
cggttgaaggactacgaggaactctatgcgaagcggactcagctacagacggaggaggag
caattgaggaagaagatggaggaatttagagctgccatgcattgcattctccgtcatctt
ggggagcctctggaagaggttggggtggaaaaggaggctgctttcgagctgcttaagttc
gcaggtggccgggattggggctgcattcactcagtcatggtgcgcgagtgccggaggttg
gacgagaatttgccactttatgcatgcagaaggcaaattttgagaaatatagttgcgaat
caggtaatgatcttgattggggagactggttctggaaagagtacacaattggtccaatat
cttgctgattcagggctagtcactgatggatcagttgtgtgtactcagccacgtaaaatt
gctgccatatctttagcacaaaggattgcagaggaaagttatggatgctatgctgagaat
tctgtggtttcttatccgacctactcatcatcccagctattcaattctaaggtgatattt
atgacagaccattgtcttctgcaacactgcatgaatgggatccgtctgggtggtatttca
tatatcatcatagatgaagctcatgaaagaagcttgaatactgatctgttgttggcattg
ataaagagaaagctgcttgagaggaatgatctaaagcttataataatgtctgctacagct
aatgctagcaaactttcagattacttctgtggttgcagcaccttttatgtaatggcaaga
aacttccctgttgaagtcaaatatgttcctgatatatctgctgatgattcttatgctttc
attacaaaatattattctggtaattatccttcatatctttctgatgtggttaagatggtg
aatgtgattcacaagacagaggatgatggtgctattcttgcattcttgacttcacagatc
gaagtagaatgggcttgtgaaaagtttaatgacccctctgcagttgttttgccaatgcat
ggaaaactttcttgtgaagagcaaaatcgtgttttccaaagttaccctggaaaaaggaag
attatattttccactaatgtagcagagacttcacttactattcaagatgtcaagtatgtt
gttgattctggaatggtcaaagagagcaagtttgatgcgagcagtggtgtgaatgtgctt
aaggtttgcaggatcagccaaagttctgcaaatcaacgagctggtcgagcaggtagaaca
gcacctggccggtgctacagggtttactcagaacatgatttccaatcaatgcaaatgcat
caggagcctgaaattcgtaaagtgcaccttggaattgcgtgcttgaggattcttgcatta
ggtgtaaagaatgtacaagactttgagtttattgatgccccaagtccaaaggcaattgag
gtagcaacacagagtctaatccaactaggtgccataattcattgcaaggatgcatttgaa
ttaactgagactggacactgcctgatcaaattgggtattgaaccaagacttggaaaaatt
attcttgattgcgttagttgtggcttgatcaaagaaggcttggttcttgctgctgtaatg
acaaatgctagcagcatattttgcagagttggtagtcatgagcagaaacttaaagcagac
tgtctgaaagtgccattctgccatcatgatggtgaccttttcactctgctttctgtttac
aaggaatgggaagatgaaaatgaaagtaaaagcaaatggtgctggcagaacagcatcaat
gctaagtcaatgagaagatgtcaggataccatgcaggatctgaaaaactgccttctacat
gaactcaaaattgtcattccaaattactggttatggaacccacataaacccagtgagcat
gacaagtcattgaagaaggttatacttgcatcccttgctgaaaatacagcaatgtattct
ggatgtgatcaactaggttacaaagtggctttaacaggtcaaaatctgcccctgcatcct
tcatgttccttaatagtatatggccacaagccaagctgggtagtttttggtgaaattttg
tcgatatcagatcaatatttgttttgtgtgacagctgttgactatgattgcttgtacaac
attgagcctccattatttgatgtcatgcagttggagagccagaagatgcatatgaatgtg
gttactggagttggtgttaatcttcttaaaaggctatgtggaaaatttaataataaccta
cggtgcctagtttcaagtgttcaagaagtttgcaaggacaaaaatatctgtattgatgtt
gacttcaacaaaagagaaattcagttatttgccccaaaaaacagtatggaaaaagtttgt
tctattgttaatgatgccttggagttggaaacacaatggttaagggatgaatgcattgag
aaatgcttgtatcatggaagtcttggtgtttctcctattgcactgtttggttcaggtgct
gaaattaagcatgtagaacttcgaaagagatacctaactgtagagatatcccatccaaat
gcacatactctcgatgacaaggaacttctcgtgatggttgataaacatgggtatggaata
gctaattttcataagcatgcagggagtggacaagggggatcagacttaaacaaatggggc
aaggtaacctttctgagtcctgaggctgcagaagatgctgtagccaggctaaataatgta
gagtttcatggttccttattgaaagttcttccgttgagggcaggagatcataaagtgttg
ccatttccttcagtaaaagccaaagtttgttggccacgtaggcctagcaagggagtagcg
ctgattgcgtgtgcaaaagaggatgctgaatttatagttaaagactgctctacattgctc
attggtgaaaggtatgttaattgtgaagtcagtgtgaaatccaaggattgtgtttttgtg
acaggaattcaaaaggatattacagaaccagaaatatatgatgcatttgtaggagcaaca
aaaaggagaatcctgggtgttcgtttgttgagaggggaagccatgaataacctcccacca
tctacttatgcagaatttcttgttagagaaattgctcctttcatgcctagcaagaattca
agtaactgtttctgggtcgaagtctttgactatgaaccaagagattggatggtgaaagca
ataattacatttgatggcaatctacatttggaagcagcaaatgctttgaattacatccaa
gggagagtgctcccttgctgtctaccatggcaaaagatacagtgccagcatatgttttac
agttcagtatcttgctctcctcatgtttattttgttcttaagaagcaaatggatcaacta
cttgaaaggttcaagaatcagaaaggtgtgtcttataatttggaaaggaatgaaaatggt
gcctttcggataaagttatctgctaattccccaaaaaccatcgcagatttgaggaatcct
ctggagcagttgttgaaaggcaagacaataagtcatccaaacctcactccaagagtgctg
caatcccgggatggtattgtgcttatgaaatctgtggagcgagagaccagaacttgcatc
atgtatgacagacagaacatgattgttaaagtgtttggacctcagaaagcagtggatgca
gctgaggtgaagctggtgaggtcggtactttcgtttcatgagaacaagcaacttgagatc
cgacttcggggccacaacctgcctccaggcttgatgaaagaggttgttcggaggtttgga
ccagaccttcaaggactgaaggaaaaggtccctggtgtcaatgtgattcttaagacgcga
gatcatatcctctcggttcaaggaagcaacgaactgaaacaaaaggtggaagaaattata
tctgaggtgactcagtctcttggaagtggcagtgcattcgagcaatcactggacgaagct
atttgccccatttgcctgtgtgagttggaggagcccttcaagcttgaggagtgtggtcat
gatttctgtcgcacttgtttgatagaacagtgcgagtctgctatcagatcacgggatgga
tttccattgtgctgcaccaagaagggttgtggaacgcctctactgcttgtggacctgaag
tctttgttatgtagtgacaagttggaagaactattcagagcctccttgggtgcctttgtg
gcatccagtgaaggggcctatcgcttctgtcccactcctgactgcccatcggtgtatgag
gtctccacaccgaatgcagcggccgggcattttgtatgtggtgcttgctcggcagaggtc
tgcaccaaatgccatttggagtaccatccttttgtatcctgtgagcaatacagagagttc
aaggaggacccaaacctctcggtggtggaatggcgactggggaaggagcatgtcaaggac
tgcccctcctgcagccacataatagagaaggtggatgggtgcaaccacgtcgcatgccgt
tgtggagtccacatctgctgggtgtgcttggagtcattcgaaagcagtgagaaatgttac
agtcacctcgcttcatcacaccatgctatagtatga
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integrated database retrieval system
